PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_22280V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 359aa    MW: 38784.2 Da    PI: 4.9957
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_22280V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.37.9e-134493255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        y+GVr+   +g WvAeIr p   + r  r +lg++ tae Aa a+  a++ l+g
  Pp3c5_22280V3.2.p 44 TYRGVRQQT-WGMWVAEIRKP---N-RgLRLWLGTYSTAEIAALAYNSAARILYG 93
                       69****988.**********8...2.35*********************998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.35E-2443102No hitNo description
Gene3DG3DSA:3.30.730.104.2E-2544102IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-164499IPR016177DNA-binding domain
PfamPF008478.7E-74488IPR001471AP2/ERF domain
PROSITE profilePS5103220.16544101IPR001471AP2/ERF domain
SMARTSM003803.6E-2844107IPR001471AP2/ERF domain
PRINTSPR003675.8E-84556IPR001471AP2/ERF domain
PRINTSPR003675.8E-86783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGKTDAGSGS SRSCTKKNMR QAPAKGSKRG CMKGKGGPEN ALCTYRGVRQ QTWGMWVAEI  60
RKPNRGLRLW LGTYSTAEIA ALAYNSAARI LYGPNALLNQ PNRTPNGSNP DEHMDRTTAT  120
YSSASSAEIG NLGGKSFQKI ERVPCKLRSG GAEPHSQAGK EGRSAASFTT PESLADHDID  180
TATSLQALQM LAADVVLPDS EPPKPWPCDP KPEFIDKAWL QESNQPSFLP PKQLIKDVLE  240
NDHDIFNFKL DNGSDLAPPL QLETTSGLNE ITTTIGAFSE ARWTKNECGS DMPEAMPESD  300
QSNGSTFTST THTMDTTVDV ASLGDLNDED LQILMQLWSP ELASYAWNAA SVELSVSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1445107669ATERF1
3gcc_A2e-1445107669ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375485.10.0uncharacterized protein LOC112282286
TrEMBLA0A2K1KKQ10.0A0A2K1KKQ1_PHYPA; Uncharacterized protein
STRINGPP1S23_27V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-35ERF family protein