PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_22030V3.3.p
Common NamePHYPADRAFT_69400
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 567aa    MW: 61771.7 Da    PI: 8.3981
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_22030V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19351401256
                AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr ++ +grW AeIrd       + r++lg+f+tae+Aa+a++aa+++l+g+
  Pp3c5_22030V3.3.p 351 AYRGVRKRP-WGRWSAEIRDrI----GKCRHWLGTFDTAEDAARAYDAAARRLRGA 401
                        69*******.**********33....24**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.18E-15350408No hitNo description
SuperFamilySSF541712.22E-21350408IPR016177DNA-binding domain
SMARTSM003801.6E-32351414IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-29351408IPR001471AP2/ERF domain
PROSITE profilePS5103222.642351408IPR001471AP2/ERF domain
PfamPF008474.2E-13351400IPR001471AP2/ERF domain
PRINTSPR003676.9E-10352363IPR001471AP2/ERF domain
PRINTSPR003676.9E-10374390IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MEVHALLVGS AAAHAKRKWN SGLLPSPVKK EKIDHLGLFD AQPNGVEGAC MHCLAPTSHN  60
LCDVCIISTL PYENQGQLDP SPFHLNLKHT NVAAQDMRFH RPASDVRTHP AQNSSSLSTG  120
ILSRHPAQFS NPDPIQNDFS HMKQSANMPV QSDVGNPVHQ SSRTVRISSS EAMEDNVVAS  180
HDYGIGAVVG QHNLFGNPEP LRQLSGFPSQ EMTTKFPVLP NPRQQQPLSV NSSFSVGSVS  240
AGAAHTDFFL DSSMTSGHDM PNIPQATPYS VQIHRIHPTV QVVSPESEHA SLGSRRLEGT  300
AFHTLQHPQF YATTKTDGER YAEMERQCLS NNIADKVMIN QHSPRPVTKS AYRGVRKRPW  360
GRWSAEIRDR IGKCRHWLGT FDTAEDAARA YDAAARRLRG AKARTNFELP SSCSSPPSDS  420
PTLPPGENSP TSNSSLSLKQ ASYLSRSIAD HSGQLRRTPN EESNSHAQAA EAQSTQECCR  480
QQPISPSKTA AVDQAPNGTL KLDLTLGNCS SRSCSSSDRI QQSPCNSSET GIYLPTRHFP  540
TPRFATLGSH RIALNAWHSC ATHAHK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-17352409361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375267.10.0uncharacterized protein LOC112282168
TrEMBLA0A2K1KKP00.0A0A2K1KKP0_PHYPA; Uncharacterized protein
STRINGPP1S23_8V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.12e-16ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]