PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_22030V3.1.p | ||||||||
Common Name | PHYPADRAFT_69400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 567aa MW: 61771.7 Da PI: 8.3981 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.7e-19 | 351 | 401 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr ++ +grW AeIrd + r++lg+f+tae+Aa+a++aa+++l+g+ Pp3c5_22030V3.1.p 351 AYRGVRKRP-WGRWSAEIRDrI----GKCRHWLGTFDTAEDAARAYDAAARRLRGA 401 69*******.**********33....24**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.18E-15 | 350 | 408 | No hit | No description |
SuperFamily | SSF54171 | 2.22E-21 | 350 | 408 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-32 | 351 | 414 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-29 | 351 | 408 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.642 | 351 | 408 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-13 | 351 | 400 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-10 | 352 | 363 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-10 | 374 | 390 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 567 aa Download sequence Send to blast |
MEVHALLVGS AAAHAKRKWN SGLLPSPVKK EKIDHLGLFD AQPNGVEGAC MHCLAPTSHN 60 LCDVCIISTL PYENQGQLDP SPFHLNLKHT NVAAQDMRFH RPASDVRTHP AQNSSSLSTG 120 ILSRHPAQFS NPDPIQNDFS HMKQSANMPV QSDVGNPVHQ SSRTVRISSS EAMEDNVVAS 180 HDYGIGAVVG QHNLFGNPEP LRQLSGFPSQ EMTTKFPVLP NPRQQQPLSV NSSFSVGSVS 240 AGAAHTDFFL DSSMTSGHDM PNIPQATPYS VQIHRIHPTV QVVSPESEHA SLGSRRLEGT 300 AFHTLQHPQF YATTKTDGER YAEMERQCLS NNIADKVMIN QHSPRPVTKS AYRGVRKRPW 360 GRWSAEIRDR IGKCRHWLGT FDTAEDAARA YDAAARRLRG AKARTNFELP SSCSSPPSDS 420 PTLPPGENSP TSNSSLSLKQ ASYLSRSIAD HSGQLRRTPN EESNSHAQAA EAQSTQECCR 480 QQPISPSKTA AVDQAPNGTL KLDLTLGNCS SRSCSSSDRI QQSPCNSSET GIYLPTRHFP 540 TPRFATLGSH RIALNAWHSC ATHAHK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-17 | 352 | 409 | 3 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024375267.1 | 0.0 | uncharacterized protein LOC112282168 | ||||
TrEMBL | A0A2K1KKP0 | 0.0 | A0A2K1KKP0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S23_8V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80580.1 | 2e-16 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_22030V3.1.p |
Entrez Gene | 5919877 |
Publications ? help Back to Top | |||
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