PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_20560V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 602aa    MW: 66483.3 Da    PI: 5.9949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_20560V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.9e-14390436354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h + Er+RR+ +N+++++Lr+l+P++     +K + a+i+  A+eY+k+L
  Pp3c5_20560V3.1.p 390 VNHFATERQRREYLNEKYQTLRSLVPNP-----TKADRASIVADAIEYVKEL 436
                        68**************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-16387452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.643387436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-11390436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.66E-12390441No hitNo description
Gene3DG3DSA:4.10.280.105.6E-15391449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12393442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MCPQTTLSAR EAGRECLRHG SESGLADCER EFQERARSHA NDLERSPSIL PKTPTSPEIL  60
DHEINVSSQL LSSRPSRPKD NMHRYNSQNN MTYDDSRYFN GTQESTFEVE SEAPEAAGRN  120
MMLNFGGTMD RLDPSASFPG LGELPSNGME PAVEQNLTGT FTGDLNSTAY EVGDDHNHLL  180
QEMLQQHSQT QQAQLSDANS QVPATASHGA WEDSLNVLQE MVHLQQQQQV QQIYNQAQTE  240
AHEFNQSYSA DRFRNAPYGS GAKFPGESDL LNLFQFPRST STSLIPSFGY TTGIRGKGPW  300
YSTSTISGPV NTDNRSIGVD PLLAHHSQNS SQGFFHNLSR GNTPEASRHG GPATLVDLDQ  360
EREVLSGKNI VYGSKRELGA ASAKGEPRGV NHFATERQRR EYLNEKYQTL RSLVPNPTKA  420
DRASIVADAI EYVKELKRTV QELQLLVQEK RRAAGDSSGA KRRRSLDATD TYPGACTPEN  480
ASNGHLVMQK GNDTFSADGS QLRSSWLQRT SQNGTHVDVR IVHDEVTIKV NQRRGKTCLV  540
FDVISVLQEL QLDLLQASGA TIGEHDVFLF NTKILEGSST FAGYIAVKLL DALDRHFVIN  600
Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1449463KRRAAGDSSGAKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375411.10.0transcription factor EAT1-like isoform X1
TrEMBLA0A2K1KKG80.0A0A2K1KKG8_PHYPA; Uncharacterized protein
STRINGPP1S93_186V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP26591431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.29e-46bHLH family protein