PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_19550V3.3.p | ||||||||
Common Name | PHYPADRAFT_165664 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 24126.5 Da PI: 10.8095 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.5 | 2.4e-11 | 102 | 144 | 1 | 50 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 + +GV++ k+ +W A I++ +k+++lg+ + eeAa+++++a+ Pp3c5_19550V3.3.p 102 CVMRGVYF--KNMKWQAAIKVE-----KKQVHLGTVNSQEEAARLYDRAA 144 568***99..47*********6.....6********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 8.9 | 81 | 159 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.6E-5 | 102 | 144 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-8 | 103 | 146 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-7 | 105 | 149 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-4 | 105 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MVSIRKRRQG GLSPDNTNRP QVYKASSYPR PTAVSASYPN TKKDLPLKQE VGVSRFRFAT 60 PPPLPSFQDV HQLLNPASLP KERELKKRKW QRRKHQENQE ACVMRGVYFK NMKWQAAIKV 120 EKKQVHLGTV NSQEEAARLY DRAAYLRGRE PNFELTEAEK QELQLLQWEE FLEQTRQAIL 180 SKKRKRGTSN ASGQNTEAVV SPKSFKCSS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 88 | PKERELKKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.417 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024375016.1 | 1e-154 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_024375017.1 | 1e-154 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_024375018.1 | 1e-154 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_024375019.1 | 1e-154 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A2K1KKB1 | 1e-153 | A0A2K1KKB1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S93_77V6.1 | 1e-154 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.2 | 9e-20 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_19550V3.3.p |
Entrez Gene | 5930604 |
Publications ? help Back to Top | |||
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