PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c5_18850V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 453aa MW: 48951.6 Da PI: 7.9259

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c5_18850V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.7e-09	257	304	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Pp3c5_18850V3.1.p 257 SHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 304 8***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.81E-17	251	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.59E-11	251	308	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.1E-16	253	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.669	253	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.0E-6	257	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.0E-9	259	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MDKLRAMGYP LGITMDPTKG DMVLQEASTQ HSLQQLSHDP SFAERAAKYS TFGTSNYAQR 60 PQTYGSYDTF RDTLENESKI SRSSSLNQLG SLGTNSDTRQ FVEEEMKPKG DQVDPKSEAM 120 MEAIEGAQGA RAAAVNESSD GVSQENSSGS QQTEPLSNRS GAPQRKRKGS AAADGKGKTS 180 TSSFASDGKD SKSMEANEQT SLKRQRSGPV KAERSASENS GDSVGPSSLK ASSKSVQNLP 240 KQDYIHVRAR RGQATDSHSL AERVRREKIS ERMKFLQDLV PGCSKVTGKA VMLDEIINYV 300 QSLQRQIEFL SMKLAAVNPR LDYGFDVLGK DLLQLRSPET TLVGPDPLSG YVEMHHAQVH 360 HPMRMSPGCG LDMRSVESVC DSYLRRSMSV PTMGSLVSGD DFGDPLSQVC GNGDLQSVVE 420 MGFIQGRQSL GKGSLVNHGS SLCKSGKSKV EL*

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MDKLRAMGYP LGITMDPTKG DMVLQEASTQ HSLQQLSHDP SFAERAAKYS TFGTSNYAQR  60
PQTYGSYDTF RDTLENESKI SRSSSLNQLG SLGTNSDTRQ FVEEEMKPKG DQVDPKSEAM  120
MEAIEGAQGA RAAAVNESSD GVSQENSSGS QQTEPLSNRS GAPQRKRKGS AAADGKGKTS  180
TSSFASDGKD SKSMEANEQT SLKRQRSGPV KAERSASENS GDSVGPSSLK ASSKSVQNLP  240
KQDYIHVRAR RGQATDSHSL AERVRREKIS ERMKFLQDLV PGCSKVTGKA VMLDEIINYV  300
QSLQRQIEFL SMKLAAVNPR LDYGFDVLGK DLLQLRSPET TLVGPDPLSG YVEMHHAQVH  360
HPMRMSPGCG LDMRSVESVC DSYLRRSMSV PTMGSLVSGD DFGDPLSQVC GNGDLQSVVE  420
MGFIQGRQSL GKGSLVNHGS SLCKSGKSKV EL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024376877.1	0.0	transcription factor bHLH49-like
Refseq	XP_024376878.1	0.0	transcription factor bHLH49-like
Refseq	XP_024376879.1	0.0	transcription factor bHLH49-like
TrEMBL	A0A2K1KK91	0.0	A0A2K1KK91_PHYPA; Uncharacterized protein
STRING	PP1S377_42V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	7e-56	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c5_18850V3.1.p