PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_17790V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 450aa    MW: 50719.2 Da    PI: 6.6085
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_17790V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS382.64.7e-117734441373
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPil 91 
                        l++lLle A+ +s+ d  +a+ lL+ ls ++s +gd+ +R+a++f eALa+r +r s+ ++ + lp++ +   + +e ++a+ ++++v+P++
  Pp3c5_17790V3.2.p  73 LRDLLLETAQLISQCDWDRARPLLQLLSRRVSTTGDSSERVASCFFEALATRFSRvSGIQINELLPSRIQG-PSNQEMISAYLALNQVTPFM 163
                        6899***************************************************8888888888777776.5678999************* PP

               GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                        +f+hltaNqa+lea+ ge+ vHi+D++i++G+QWp ++qaLa+ +        +lRiTgvg+    +++ l++tg rLa+fA+++++pfef+
  Pp3c5_17790V3.2.p 164 RFAHLTANQALLEALTGENFVHIVDLEIGHGIQWPLFMQALADLRgeegYTIQHLRITGVGQ----DRDVLNRTGIRLAEFAQSINLPFEFS 251
                        ******************************************55535433477*********....************************** PP

               GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                        +l ++  e l +++L ++ gEa+a+n++lqlhrll++  +      ++L ++ sl Pkvv+++e ea+hn++ Fl+rf+eal++ys+lfdsl
  Pp3c5_17790V3.2.p 252 PL-VQISEHLVPRMLGLRVGEAVAINCMLQLHRLLAKGPEKLI---SFLCMLESLTPKVVTLAELEASHNQPHFLDRFAEALNHYSTLFDSL 339
                        *5.88899999************************66655555...9********************************************* PP

               GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..sgslvl 360
                        +a+lp++s +ri vE+ + + eivn+vac gaer+ rh+++e Wr+ +++aGF+ ++ s +a++qa+lllr ++  d y++ e+  +g+l+l
  Pp3c5_17790V3.2.p 340 DATLPPTSADRIRVEQTWCKMEIVNIVACDGAERIVRHQRFELWRRYFHRAGFQLLSTSRFATSQARLLLRLHYpCDDYQLLENvdDGCLLL 431
                        ***************************************************************************999**997666****** PP

               GRAS 361 gWkdrpLvsvSaW 373
                        gW+d+pL+ vS+W
  Pp3c5_17790V3.2.p 432 GWQDHPLFCVSSW 444
                        ************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.43747422IPR005202Transcription factor GRAS
PfamPF035141.6E-11473444IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MQLSVPPLRM RVLSHNFSSL QLSLRSPAIL HEMLGSVGSN PSASRELAPE VSSPRQTYGY  60
VDHSSFSGGL MQLRDLLLET AQLISQCDWD RARPLLQLLS RRVSTTGDSS ERVASCFFEA  120
LATRFSRVSG IQINELLPSR IQGPSNQEMI SAYLALNQVT PFMRFAHLTA NQALLEALTG  180
ENFVHIVDLE IGHGIQWPLF MQALADLRGE EGYTIQHLRI TGVGQDRDVL NRTGIRLAEF  240
AQSINLPFEF SPLVQISEHL VPRMLGLRVG EAVAINCMLQ LHRLLAKGPE KLISFLCMLE  300
SLTPKVVTLA ELEASHNQPH FLDRFAEALN HYSTLFDSLD ATLPPTSADR IRVEQTWCKM  360
EIVNIVACDG AERIVRHQRF ELWRRYFHRA GFQLLSTSRF ATSQARLLLR LHYPCDDYQL  420
LENVDDGCLL LGWQDHPLFC VSSWNTNNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-667944525379Protein SCARECROW
5b3h_A6e-667944524378Protein SCARECROW
5b3h_D6e-667944524378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375390.10.0scarecrow-like protein 18
RefseqXP_024375391.10.0scarecrow-like protein 18
RefseqXP_024375392.10.0scarecrow-like protein 18
RefseqXP_024375393.10.0scarecrow-like protein 18
RefseqXP_024375394.10.0scarecrow-like protein 18
RefseqXP_024375395.10.0scarecrow-like protein 18
RefseqXP_024375396.10.0scarecrow-like protein 18
TrEMBLA0A2K1KK670.0A0A2K1KK67_PHYPA; Uncharacterized protein
STRINGPP1S116_166V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-91GRAS family protein