PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_1710V3.7.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 808aa    MW: 91355.9 Da    PI: 6.5639
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_1710V3.7.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS258.52.5e-794027892374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPil 91 
                       ++lL  cA a++s++ ++ q+l++ l++las  gd++qR aay ++AL  r+++ ++     l+p++ ++++s    +++++   f+e  P++
  Pp3c5_1710V3.7.p 402 EQLLNLCAAAIASKNISRMQHLMWVLNDLASVVGDANQRYAAYGLRALFCRITGRMEAAKTYLRPRHYDQEQSYGPKMVHRAlvkFHEHVPWH 494
                       689999************************************************9999999999999999997777777777778******** PP

              GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.......skeeleetgerLakfAeelgvpf 176
                       + ++ +a q++le  +g++r+HiiD+++++G+ Wp +++aL sR++gpp  lR+T + + + +          e      rL kfA+ lg+++
  Pp3c5_1710V3.7.p 495 QNCYSVASQTLLEVCAGKSRLHIIDIGAGKGIEWPIFIDALVSRSGGPPsILRMTMIRDLQREepnlrtrGGSEAADFMTRLVKFASLLGLHV 587
                       *********************************************9999689*******998889998887888889999************* PP

              GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.....desvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                       e n+ v k le+++ e+L+++ gE laV ++++lhrl      ++     s     +rd++L+++ +l P++++ +++++dh s++Fl+rf +
  Pp3c5_1710V3.7.p 588 EVNM-VRKPLECVTREDLKLRDGEILAVVCQFRLHRLSeeldyQS-----SppdlsPRDKFLDFLFTLDPHIFIQSDNDSDHCSQDFLTRFQN 674
                       ***9.7*******************************93333333.....2444559************************************ PP

              GRAS 260 aleyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350
                       a+++ + +f+s+++++   + +er+ +E e  +  + n+vaceg +r+er+e++ +W +r+++aGF p +lse++ k  + l+++++ ++  +
  Pp3c5_1710V3.7.p 675 AVSFWWRCFESIDVGYNGRDpDERQIIEYE-GAMMLLNMVACEGIARIERNESYPQWARRIKRAGFMPRELSEETKKVSQNLVANHSeFW--E 764
                       ************999877776999999999.88899***************************************************444..4 PP

              GRAS 351 ve.eesgslvlgWkdrpLvsvSaWr 374
                           es+ + l W+++p +++S+W+
  Pp3c5_1710V3.7.p 765 TAfIESNMVSLLWRKQPTTFTSVWK 789
                       4414566666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.332375769IPR005202Transcription factor GRAS
PfamPF035148.6E-77402789IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MFAKDMGGAG QHIMDMSRGN LDRRGAAQTW VNPYSNPEFE YVYLGSPQTS QDSQTPLILD  60
PGMSSVSSGS QVLQPPTGNV HYNASYGRTS QSKYAVQPSS NFQGHLHPAQ QFSAPPMHRH  120
KAPEMHTPFS QEFYNVQDEI DMQSYEDIWR NLESDFLAQT SAQYDATPGD INMVDAVYNV  180
SQSTPGIPFP VPNQTQPVSR PIADQKTWNM LSNSVQNEAE SSSNVRTRYG NASSSTRHPF  240
GFNPPRHFAE QAQPHQRSEV AQNRDLSFHQ SVMETRPDFM DMVMDDSVSD GISITGSSDN  300
QLRHAQSPNY GFGSHGYAGT ASNFGERQHS AVQQSFQPEN NSREQMQTNH QYNRFPEHRE  360
ASFSSGGDLY NETKSGVESD FSTLMAPGQS GLRSLGESRW AEQLLNLCAA AIASKNISRM  420
QHLMWVLNDL ASVVGDANQR YAAYGLRALF CRITGRMEAA KTYLRPRHYD QEQSYGPKMV  480
HRALVKFHEH VPWHQNCYSV ASQTLLEVCA GKSRLHIIDI GAGKGIEWPI FIDALVSRSG  540
GPPSILRMTM IRDLQREEPN LRTRGGSEAA DFMTRLVKFA SLLGLHVEVN MVRKPLECVT  600
REDLKLRDGE ILAVVCQFRL HRLSEELDYQ SSPPDLSPRD KFLDFLFTLD PHIFIQSDND  660
SDHCSQDFLT RFQNAVSFWW RCFESIDVGY NGRDPDERQI IEYEGAMMLL NMVACEGIAR  720
IERNESYPQW ARRIKRAGFM PRELSEETKK VSQNLVANHS EFWETAFIES NMVSLLWRKQ  780
PTTFTSVWKS SSCTNPKHSC KCSKLHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-4039878984473Protein SHORT-ROOT
5b3h_B2e-4039878930419Protein SHORT-ROOT
5b3h_E2e-4039878930419Protein SHORT-ROOT
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.36260.0protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375359.10.0nodulation-signaling pathway 1 protein-like isoform X1
RefseqXP_024375360.10.0nodulation-signaling pathway 1 protein-like isoform X1
RefseqXP_024375361.10.0nodulation-signaling pathway 1 protein-like isoform X1
TrEMBLA0A2K1KI230.0A0A2K1KI23_PHYPA; Uncharacterized protein
STRINGPP1S72_74V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.12e-51GRAS family protein