PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_1710V3.6.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 853aa    MW: 95971 Da    PI: 6.7187
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_1710V3.6.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS258.32.8e-794478342374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPil 91 
                       ++lL  cA a++s++ ++ q+l++ l++las  gd++qR aay ++AL  r+++ ++     l+p++ ++++s    +++++   f+e  P++
  Pp3c5_1710V3.6.p 447 EQLLNLCAAAIASKNISRMQHLMWVLNDLASVVGDANQRYAAYGLRALFCRITGRMEAAKTYLRPRHYDQEQSYGPKMVHRAlvkFHEHVPWH 539
                       689999************************************************9999999999999999997777777777778******** PP

              GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.......skeeleetgerLakfAeelgvpf 176
                       + ++ +a q++le  +g++r+HiiD+++++G+ Wp +++aL sR++gpp  lR+T + + + +          e      rL kfA+ lg+++
  Pp3c5_1710V3.6.p 540 QNCYSVASQTLLEVCAGKSRLHIIDIGAGKGIEWPIFIDALVSRSGGPPsILRMTMIRDLQREepnlrtrGGSEAADFMTRLVKFASLLGLHV 632
                       *********************************************9999689*******998889998887888889999************* PP

              GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.....desvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                       e n+ v k le+++ e+L+++ gE laV ++++lhrl      ++     s     +rd++L+++ +l P++++ +++++dh s++Fl+rf +
  Pp3c5_1710V3.6.p 633 EVNM-VRKPLECVTREDLKLRDGEILAVVCQFRLHRLSeeldyQS-----SppdlsPRDKFLDFLFTLDPHIFIQSDNDSDHCSQDFLTRFQN 719
                       ***9.7*******************************93333333.....2444559************************************ PP

              GRAS 260 aleyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350
                       a+++ + +f+s+++++   + +er+ +E e  +  + n+vaceg +r+er+e++ +W +r+++aGF p +lse++ k  + l+++++ ++  +
  Pp3c5_1710V3.6.p 720 AVSFWWRCFESIDVGYNGRDpDERQIIEYE-GAMMLLNMVACEGIARIERNESYPQWARRIKRAGFMPRELSEETKKVSQNLVANHSeFW--E 809
                       ************999877776999999999.88899***************************************************444..4 PP

              GRAS 351 ve.eesgslvlgWkdrpLvsvSaWr 374
                           es+ + l W+++p +++S+W+
  Pp3c5_1710V3.6.p 810 TAfIESNMVSLLWRKQPTTFTSVWK 834
                       4414566666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.332420814IPR005202Transcription factor GRAS
PfamPF035149.8E-77447834IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MRTSRRADGL PQAPCPSSTM QRFAVGHSSH PGDGSVYGSA SSNLAMFAKD MGGAGQHIMD  60
MSRGNLDRRG AAQTWVNPYS NPEFEYVYLG SPQTSQDSQT PLILDPGMSS VSSGSQVLQP  120
PTGNVHYNAS YGRTSQSKYA VQPSSNFQGH LHPAQQFSAP PMHRHKAPEM HTPFSQEFYN  180
VQDEIDMQSY EDIWRNLESD FLAQTSAQYD ATPGDINMVD AVYNVSQSTP GIPFPVPNQT  240
QPVSRPIADQ KTWNMLSNSV QNEAESSSNV RTRYGNASSS TRHPFGFNPP RHFAEQAQPH  300
QRSEVAQNRD LSFHQSVMET RPDFMDMVMD DSVSDGISIT GSSDNQLRHA QSPNYGFGSH  360
GYAGTASNFG ERQHSAVQQS FQPENNSREQ MQTNHQYNRF PEHREASFSS GGDLYNETKS  420
GVESDFSTLM APGQSGLRSL GESRWAEQLL NLCAAAIASK NISRMQHLMW VLNDLASVVG  480
DANQRYAAYG LRALFCRITG RMEAAKTYLR PRHYDQEQSY GPKMVHRALV KFHEHVPWHQ  540
NCYSVASQTL LEVCAGKSRL HIIDIGAGKG IEWPIFIDAL VSRSGGPPSI LRMTMIRDLQ  600
REEPNLRTRG GSEAADFMTR LVKFASLLGL HVEVNMVRKP LECVTREDLK LRDGEILAVV  660
CQFRLHRLSE ELDYQSSPPD LSPRDKFLDF LFTLDPHIFI QSDNDSDHCS QDFLTRFQNA  720
VSFWWRCFES IDVGYNGRDP DERQIIEYEG AMMLLNMVAC EGIARIERNE SYPQWARRIK  780
RAGFMPRELS EETKKVSQNL VANHSEFWET AFIESNMVSL LWRKQPTTFT SVWKSSSCTN  840
PKHSCKCSKL HN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B4e-4044383484473Protein SHORT-ROOT
5b3h_B2e-4044383430419Protein SHORT-ROOT
5b3h_E2e-4044383430419Protein SHORT-ROOT
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.36260.0protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375359.10.0nodulation-signaling pathway 1 protein-like isoform X1
RefseqXP_024375360.10.0nodulation-signaling pathway 1 protein-like isoform X1
RefseqXP_024375361.10.0nodulation-signaling pathway 1 protein-like isoform X1
TrEMBLA0A2K1KI230.0A0A2K1KI23_PHYPA; Uncharacterized protein
STRINGPP1S72_74V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.13e-51GRAS family protein