PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_1710V3.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | GRAS | ||||||||
Protein Properties | Length: 853aa MW: 95971 Da PI: 6.7187 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 258.3 | 2.8e-79 | 447 | 834 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPil 91 ++lL cA a++s++ ++ q+l++ l++las gd++qR aay ++AL r+++ ++ l+p++ ++++s +++++ f+e P++ Pp3c5_1710V3.5.p 447 EQLLNLCAAAIASKNISRMQHLMWVLNDLASVVGDANQRYAAYGLRALFCRITGRMEAAKTYLRPRHYDQEQSYGPKMVHRAlvkFHEHVPWH 539 689999************************************************9999999999999999997777777777778******** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.......skeeleetgerLakfAeelgvpf 176 + ++ +a q++le +g++r+HiiD+++++G+ Wp +++aL sR++gpp lR+T + + + + e rL kfA+ lg+++ Pp3c5_1710V3.5.p 540 QNCYSVASQTLLEVCAGKSRLHIIDIGAGKGIEWPIFIDALVSRSGGPPsILRMTMIRDLQREepnlrtrGGSEAADFMTRLVKFASLLGLHV 632 *********************************************9999689*******998889998887888889999************* PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.....desvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerfle 259 e n+ v k le+++ e+L+++ gE laV ++++lhrl ++ s +rd++L+++ +l P++++ +++++dh s++Fl+rf + Pp3c5_1710V3.5.p 633 EVNM-VRKPLECVTREDLKLRDGEILAVVCQFRLHRLSeeldyQS-----SppdlsPRDKFLDFLFTLDPHIFIQSDNDSDHCSQDFLTRFQN 719 ***9.7*******************************93333333.....2444559************************************ PP GRAS 260 aleyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350 a+++ + +f+s+++++ + +er+ +E e + + n+vaceg +r+er+e++ +W +r+++aGF p +lse++ k + l+++++ ++ + Pp3c5_1710V3.5.p 720 AVSFWWRCFESIDVGYNGRDpDERQIIEYE-GAMMLLNMVACEGIARIERNESYPQWARRIKRAGFMPRELSEETKKVSQNLVANHSeFW--E 809 ************999877776999999999.88899***************************************************444..4 PP GRAS 351 ve.eesgslvlgWkdrpLvsvSaWr 374 es+ + l W+++p +++S+W+ Pp3c5_1710V3.5.p 810 TAfIESNMVSLLWRKQPTTFTSVWK 834 4414566666**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 40.332 | 420 | 814 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.8E-77 | 447 | 834 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 853 aa Download sequence Send to blast |
MRTSRRADGL PQAPCPSSTM QRFAVGHSSH PGDGSVYGSA SSNLAMFAKD MGGAGQHIMD 60 MSRGNLDRRG AAQTWVNPYS NPEFEYVYLG SPQTSQDSQT PLILDPGMSS VSSGSQVLQP 120 PTGNVHYNAS YGRTSQSKYA VQPSSNFQGH LHPAQQFSAP PMHRHKAPEM HTPFSQEFYN 180 VQDEIDMQSY EDIWRNLESD FLAQTSAQYD ATPGDINMVD AVYNVSQSTP GIPFPVPNQT 240 QPVSRPIADQ KTWNMLSNSV QNEAESSSNV RTRYGNASSS TRHPFGFNPP RHFAEQAQPH 300 QRSEVAQNRD LSFHQSVMET RPDFMDMVMD DSVSDGISIT GSSDNQLRHA QSPNYGFGSH 360 GYAGTASNFG ERQHSAVQQS FQPENNSREQ MQTNHQYNRF PEHREASFSS GGDLYNETKS 420 GVESDFSTLM APGQSGLRSL GESRWAEQLL NLCAAAIASK NISRMQHLMW VLNDLASVVG 480 DANQRYAAYG LRALFCRITG RMEAAKTYLR PRHYDQEQSY GPKMVHRALV KFHEHVPWHQ 540 NCYSVASQTL LEVCAGKSRL HIIDIGAGKG IEWPIFIDAL VSRSGGPPSI LRMTMIRDLQ 600 REEPNLRTRG GSEAADFMTR LVKFASLLGL HVEVNMVRKP LECVTREDLK LRDGEILAVV 660 CQFRLHRLSE ELDYQSSPPD LSPRDKFLDF LFTLDPHIFI QSDNDSDHCS QDFLTRFQNA 720 VSFWWRCFES IDVGYNGRDP DERQIIEYEG AMMLLNMVAC EGIARIERNE SYPQWARRIK 780 RAGFMPRELS EETKKVSQNL VANHSEFWET AFIESNMVSL LWRKQPTTFT SVWKSSSCTN 840 PKHSCKCSKL HN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 4e-40 | 443 | 834 | 84 | 473 | Protein SHORT-ROOT |
5b3h_B | 2e-40 | 443 | 834 | 30 | 419 | Protein SHORT-ROOT |
5b3h_E | 2e-40 | 443 | 834 | 30 | 419 | Protein SHORT-ROOT |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.3626 | 0.0 | protonema| sporophyte |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024375359.1 | 0.0 | nodulation-signaling pathway 1 protein-like isoform X1 | ||||
Refseq | XP_024375360.1 | 0.0 | nodulation-signaling pathway 1 protein-like isoform X1 | ||||
Refseq | XP_024375361.1 | 0.0 | nodulation-signaling pathway 1 protein-like isoform X1 | ||||
TrEMBL | A0A2K1KI23 | 0.0 | A0A2K1KI23_PHYPA; Uncharacterized protein | ||||
STRING | PP1S72_74V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 3e-51 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_1710V3.5.p |