PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c5_1710V3.4.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

GRAS

Protein Properties

Length: 834aa MW: 93985.8 Da PI: 6.6654

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c5_1710V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	258.3	2.7e-79	428	815	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPil 91 ++lL cA a++s++ ++ q+l++ l++las gd++qR aay ++AL r+++ ++ l+p++ ++++s +++++ f+e P++ Pp3c5_1710V3.4.p 428 EQLLNLCAAAIASKNISRMQHLMWVLNDLASVVGDANQRYAAYGLRALFCRITGRMEAAKTYLRPRHYDQEQSYGPKMVHRAlvkFHEHVPWH 520 689999**********************************************9999999999999999997777777777778**** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.......skeeleetgerLakfAeelgvpf 176 + ++ +a q++le +g++r+HiiD+++++G+ Wp +++aL sR++gpp lR+T + + + + e rL kfA+ lg+++ Pp3c5_1710V3.4.p 521 QNCYSVASQTLLEVCAGKSRLHIIDIGAGKGIEWPIFIDALVSRSGGPPsILRMTMIRDLQREepnlrtrGGSEAADFMTRLVKFASLLGLHV 613 *****************************************9999689***998889998887888889999********* PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.....desvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerfle 259 e n+ v k le+++ e+L+++ gE laV ++++lhrl ++ s +rd++L+++ +l P++++ +++++dh s++Fl+rf + Pp3c5_1710V3.4.p 614 EVNM-VRKPLECVTREDLKLRDGEILAVVCQFRLHRLSeeldyQS-----SppdlsPRDKFLDFLFTLDPHIFIQSDNDSDHCSQDFLTRFQN 700 9.7****************************93333333.....2444559******************************** PP GRAS 260 aleyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350 a+++ + +f+s+++++ + +er+ +E e + + n+vaceg +r+er+e++ +W +r+++aGF p +lse++ k + l+++++ ++ + Pp3c5_1710V3.4.p 701 AVSFWWRCFESIDVGYNGRDpDERQIIEYE-GAMMLLNMVACEGIARIERNESYPQWARRIKRAGFMPRELSEETKKVSQNLVANHSeFW--E 790 ********999877776999999999.88899***********************************************444..4 PP GRAS 351 ve.eesgslvlgWkdrpLvsvSaWr 374 es+ + l W+++p +++S+W+ Pp3c5_1710V3.4.p 791 TAfIESNMVSLLWRKQPTTFTSVWK 815 4414566666************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.332	401	795	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.2E-77	428	815	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 834 aa Download sequence Send to blast
MRRFAVGHSS HPGDGSVYGS ASSNLAMFAK DMGGAGQHIM DMSRGNLDRR GAAQTWVNPY 60 SNPEFEYVYL GSPQTSQDSQ TPLILDPGMS SVSSGSQVLQ PPTGNVHYNA SYGRTSQSKY 120 AVQPSSNFQG HLHPAQQFSA PPMHRHKAPE MHTPFSQEFY NVQDEIDMQS YEDIWRNLES 180 DFLAQTSAQY DATPGDINMV DAVYNVSQST PGIPFPVPNQ TQPVSRPIAD QKTWNMLSNS 240 VQNEAESSSN VRTRYGNASS STRHPFGFNP PRHFAEQAQP HQRSEVAQNR DLSFHQSVME 300 TRPDFMDMVM DDSVSDGISI TGSSDNQLRH AQSPNYGFGS HGYAGTASNF GERQHSAVQQ 360 SFQPENNSRE QMQTNHQYNR FPEHREASFS SGGDLYNETK SGVESDFSTL MAPGQSGLRS 420 LGESRWAEQL LNLCAAAIAS KNISRMQHLM WVLNDLASVV GDANQRYAAY GLRALFCRIT 480 GRMEAAKTYL RPRHYDQEQS YGPKMVHRAL VKFHEHVPWH QNCYSVASQT LLEVCAGKSR 540 LHIIDIGAGK GIEWPIFIDA LVSRSGGPPS ILRMTMIRDL QREEPNLRTR GGSEAADFMT 600 RLVKFASLLG LHVEVNMVRK PLECVTREDL KLRDGEILAV VCQFRLHRLS EELDYQSSPP 660 DLSPRDKFLD FLFTLDPHIF IQSDNDSDHC SQDFLTRFQN AVSFWWRCFE SIDVGYNGRD 720 PDERQIIEYE GAMMLLNMVA CEGIARIERN ESYPQWARRI KRAGFMPREL SEETKKVSQN 780 LVANHSEFWE TAFIESNMVS LLWRKQPTTF TSVWKSSSCT NPKHSCKCSK LHN*

Sequence ? help Back to Top

Protein Sequence Length: 834 aa Download sequence Send to blast

MRRFAVGHSS HPGDGSVYGS ASSNLAMFAK DMGGAGQHIM DMSRGNLDRR GAAQTWVNPY  60
SNPEFEYVYL GSPQTSQDSQ TPLILDPGMS SVSSGSQVLQ PPTGNVHYNA SYGRTSQSKY  120
AVQPSSNFQG HLHPAQQFSA PPMHRHKAPE MHTPFSQEFY NVQDEIDMQS YEDIWRNLES  180
DFLAQTSAQY DATPGDINMV DAVYNVSQST PGIPFPVPNQ TQPVSRPIAD QKTWNMLSNS  240
VQNEAESSSN VRTRYGNASS STRHPFGFNP PRHFAEQAQP HQRSEVAQNR DLSFHQSVME  300
TRPDFMDMVM DDSVSDGISI TGSSDNQLRH AQSPNYGFGS HGYAGTASNF GERQHSAVQQ  360
SFQPENNSRE QMQTNHQYNR FPEHREASFS SGGDLYNETK SGVESDFSTL MAPGQSGLRS  420
LGESRWAEQL LNLCAAAIAS KNISRMQHLM WVLNDLASVV GDANQRYAAY GLRALFCRIT  480
GRMEAAKTYL RPRHYDQEQS YGPKMVHRAL VKFHEHVPWH QNCYSVASQT LLEVCAGKSR  540
LHIIDIGAGK GIEWPIFIDA LVSRSGGPPS ILRMTMIRDL QREEPNLRTR GGSEAADFMT  600
RLVKFASLLG LHVEVNMVRK PLECVTREDL KLRDGEILAV VCQFRLHRLS EELDYQSSPP  660
DLSPRDKFLD FLFTLDPHIF IQSDNDSDHC SQDFLTRFQN AVSFWWRCFE SIDVGYNGRD  720
PDERQIIEYE GAMMLLNMVA CEGIARIERN ESYPQWARRI KRAGFMPREL SEETKKVSQN  780
LVANHSEFWE TAFIESNMVS LLWRKQPTTF TSVWKSSSCT NPKHSCKCSK LHN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_B	4e-40	424	815	84	473	Protein SHORT-ROOT
5b3h_B	2e-40	424	815	30	419	Protein SHORT-ROOT
5b3h_E	2e-40	424	815	30	419	Protein SHORT-ROOT
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.3626	0.0	protonema\| sporophyte

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024375362.1	0.0	nodulation-signaling pathway 1 protein-like isoform X2
TrEMBL	A0A2K1KI23	0.0	A0A2K1KI23_PHYPA; Uncharacterized protein
STRING	PP1S72_74V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13840.1	3e-51	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pp3c5_1710V3.4.p