PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c5_14440V3.2.p

Common Name

PHYPADRAFT_88451

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Dof

Protein Properties

Length: 400aa MW: 43856.2 Da PI: 6.8364

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c5_14440V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.3	1.4e-37	55	113	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k ++cprC+s+ntkfCyynnys++qPr+fC++C+ryWt GG+lrnvPvGgg+rk+ +++ Pp3c5_14440V3.2.p 55 KVIPCPRCQSMNTKFCYYNNYSVNQPRHFCRNCQRYWTVGGTLRNVPVGGGSRKKTRTR 113 5789**************************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-20	55	102	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-32	56	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.491	57	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MYLPMNRQKV LRDFEDDSND ELQAGLNDSR SPSGEGDSPV GTRGNGGCIR DKLVKVIPCP 60 RCQSMNTKFC YYNNYSVNQP RHFCRNCQRY WTVGGTLRNV PVGGGSRKKT RTRSRTDPYL 120 RSGTPQTSPI RTLSGSGGDL LSASACMQQL SMLPPSGGML GFGDQLSAFG PAGLQLPSSH 180 LALEQSLGTY PPLQKPLSGL QEVPDLQSLY EVPQVPQIPQ VSPAMLSSFS PMMMNSGFFL 240 PEMHVPSQSD ALASVMAKAC MWSNPAQQLP SLNGISQAQR SWEESQSKPP MNSQLQNLSG 300 YEERAAPANQ MNASGWPQNL KPGFWEAALM QSHPVMNDRL VPHTSWDENQ CSTHTNLSPN 360 ASSTTDEEWC PPRNCFSHGY EDASQSWVGL QASDILRYQ*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MYLPMNRQKV LRDFEDDSND ELQAGLNDSR SPSGEGDSPV GTRGNGGCIR DKLVKVIPCP  60
RCQSMNTKFC YYNNYSVNQP RHFCRNCQRY WTVGGTLRNV PVGGGSRKKT RTRSRTDPYL  120
RSGTPQTSPI RTLSGSGGDL LSASACMQQL SMLPPSGGML GFGDQLSAFG PAGLQLPSSH  180
LALEQSLGTY PPLQKPLSGL QEVPDLQSLY EVPQVPQIPQ VSPAMLSSFS PMMMNSGFFL  240
PEMHVPSQSD ALASVMAKAC MWSNPAQQLP SLNGISQAQR SWEESQSKPP MNSQLQNLSG  300
YEERAAPANQ MNASGWPQNL KPGFWEAALM QSHPVMNDRL VPHTSWDENQ CSTHTNLSPN  360
ASSTTDEEWC PPRNCFSHGY EDASQSWVGL QASDILRYQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.15443	0.0	gametophore

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024376052.1	0.0	uncharacterized protein LOC112282555 isoform X2
Refseq	XP_024376053.1	0.0	uncharacterized protein LOC112282555 isoform X2
Refseq	XP_024376054.1	0.0	uncharacterized protein LOC112282555 isoform X2
TrEMBL	A0A2K1KJN3	0.0	A0A2K1KJN3_PHYPA; Uncharacterized protein
STRING	PP1S169_171V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	1e-26	Dof family protein

Link Out ? help Back to Top
Phytozome	Pp3c5_14440V3.2.p
Entrez Gene	5937171

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]