PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_11160V3.4.p
Common NamePHYPADRAFT_94563
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 324aa    MW: 36423.2 Da    PI: 8.661
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_11160V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.91.9e-11223265148
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 
                        sgy+G+  +++r +Wv+e r     gk+ +++lg+++t++eAa a++a
  Pp3c5_11160V3.4.p 223 SGYTGI--RPRRDKWVCEMRIS---GKNEKVWLGSYDTEKEAALAYDA 265
                        79****..6999******9993...467**********99******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.4E-10223274IPR016177DNA-binding domain
SMARTSM003801.6E-5224288IPR001471AP2/ERF domain
PROSITE profilePS5103212.536224282IPR001471AP2/ERF domain
PfamPF008472.3E-6225265IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-14225282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MSSQAGMGEQ STPCRWGVVR GVANLFGGLK APVEVKHLLR ERFSLLFEPD TPEDVSEAST  60
RQYFGEAVFA EFQAGSSHDG MDLDPLATSP HDRELYLTPE DFQDEDVLWE TSHAIPPPVD  120
DRTELEPCVC GQGCLRCQAR QIIISRPSTS IGRMHPTYPW FGEGMLRRRG WKIAAGMFTA  180
YRNFSGLLSQ IRLRRTVTAE ITPATSSRTP GTRRRIFTLR SPSGYTGIRP RRDKWVCEMR  240
ISGKNEKVWL GSYDTEKEAA LAYDAGLHHC SSTRRARQYN FSSSPRLLGP QARLEHLSSA  300
DRKAIVKMIA EEYARNHSTI QIQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375416.10.0uncharacterized protein LOC112282244
RefseqXP_024375417.10.0uncharacterized protein LOC112282244
TrEMBLA0A2K1KJ960.0A0A2K1KJ96_PHYPA; Uncharacterized protein
TrEMBLA9TM700.0A9TM70_PHYPA; Predicted protein
STRINGPP1S263_67V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-10ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]