PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c5_11160V3.2.p | ||||||||
Common Name | PHYPADRAFT_94563 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 324aa MW: 36423.2 Da PI: 8.661 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.9 | 1.9e-11 | 223 | 265 | 1 | 48 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 sgy+G+ +++r +Wv+e r gk+ +++lg+++t++eAa a++a Pp3c5_11160V3.2.p 223 SGYTGI--RPRRDKWVCEMRIS---GKNEKVWLGSYDTEKEAALAYDA 265 79****..6999******9993...467**********99******97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.4E-10 | 223 | 274 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-5 | 224 | 288 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.536 | 224 | 282 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-6 | 225 | 265 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-14 | 225 | 282 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 324 aa Download sequence Send to blast |
MSSQAGMGEQ STPCRWGVVR GVANLFGGLK APVEVKHLLR ERFSLLFEPD TPEDVSEAST 60 RQYFGEAVFA EFQAGSSHDG MDLDPLATSP HDRELYLTPE DFQDEDVLWE TSHAIPPPVD 120 DRTELEPCVC GQGCLRCQAR QIIISRPSTS IGRMHPTYPW FGEGMLRRRG WKIAAGMFTA 180 YRNFSGLLSQ IRLRRTVTAE ITPATSSRTP GTRRRIFTLR SPSGYTGIRP RRDKWVCEMR 240 ISGKNEKVWL GSYDTEKEAA LAYDAGLHHC SSTRRARQYN FSSSPRLLGP QARLEHLSSA 300 DRKAIVKMIA EEYARNHSTI QIQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024375416.1 | 0.0 | uncharacterized protein LOC112282244 | ||||
Refseq | XP_024375417.1 | 0.0 | uncharacterized protein LOC112282244 | ||||
TrEMBL | A0A2K1KJ96 | 0.0 | A0A2K1KJ96_PHYPA; Uncharacterized protein | ||||
TrEMBL | A9TM70 | 0.0 | A9TM70_PHYPA; Predicted protein | ||||
STRING | PP1S263_67V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19210.1 | 1e-10 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c5_11160V3.2.p |
Entrez Gene | 5942924 |
Publications ? help Back to Top | |||
---|---|---|---|
|