PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_10960V3.2.p | ||||||||
Common Name | PHYPADRAFT_170820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 203aa MW: 23388.6 Da PI: 10.6081 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.1 | 5.8e-15 | 75 | 124 | 1 | 47 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaai 47 +++kGVr+ +k++rWv+eIr + + ++k+++lg+fgt+eeAa+a + Pp3c5_10960V3.2.p 75 PRFKGVRQLEKTKRWVSEIRPtVGLyTKqRKKKIWLGSFGTPEEAARAFD 124 689*****************96633555666****************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.9E-10 | 75 | 122 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-11 | 76 | 140 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-15 | 76 | 143 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.278 | 76 | 142 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-11 | 76 | 146 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MGEAKVEDVE MNKEKKKKGS KWKGLGGFTN AWSNFKWAIR EARIKHFENL ISVGLPGEVN 60 LIMFDEIEER PKPPPRFKGV RQLEKTKRWV SEIRPTVGLY TKQRKKKIWL GSFGTPEEAA 120 RAFDVGVYLW KDDLSVENFN FPDSPEFLRM LEPNRDTLDE KTRTARTKSL AQRAADRAAA 180 ARDFGSMSRS RRHDTRDQER GS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.12807 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024375467.1 | 1e-147 | ethylene-responsive transcription factor ERF010-like | ||||
Refseq | XP_024375468.1 | 1e-147 | ethylene-responsive transcription factor ERF010-like | ||||
TrEMBL | A9TM60 | 1e-145 | A9TM60_PHYPA; Predicted protein | ||||
STRING | PP1S263_49V6.1 | 1e-146 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 3e-12 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_10960V3.2.p |
Entrez Gene | 5942920 |
Publications ? help Back to Top | |||
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