PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_10090V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 178aa    MW: 21214.3 Da    PI: 10.503
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_10090V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.63.2e-081057655
                AP2  6 VrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ +k++rW +++r+ +++    kr+ lg++ +   A +  ++a++kle 
  Pp3c5_10090V3.1.p 10 LYYEPKTKRWSVYVREpWVK---GKRIFLGTHESQRLAIRCQDRAKLKLEA 57
                       599*************7754...3**********99999999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.86680IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-61560IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-61661IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
METTNSTKYL YYEPKTKRWS VYVREPWVKG KRIFLGTHES QRLAIRCQDR AKLKLEAELA  60
HMSTAEREIK KVQPIILEFP REDYEDDKGG KRDTLSRKEF FKYLAHESRA KYQQYKPTPC  120
LLKFLAEERE YESLSRSSSQ KLNEEVKRAH IVQRRNHGNL RRQSQAPRLG ITLRLKR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024374415.12e-41uncharacterized protein LOC112281770
TrEMBLA0A2K1KJ441e-127A0A2K1KJ44_PHYPA; Uncharacterized protein
STRINGPP1S64_206V6.11e-128(Physcomitrella patens)