PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c4_9790V3.4.p

Common Name

PHYPADRAFT_168816

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HRT-like

Protein Properties

Length: 434aa MW: 47844.5 Da PI: 10.327

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c4_9790V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	29.2	1.5e-09	314	342	2	30
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 C v +++G +C+++ g RC +HKG R Pp3c4_9790V3.4.p 314 CNVVTNNGLPCNAPSLGGHRRCPQHKGLR 342 99**************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00719	3.85E-4	103	143	No hit	No description

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MGFMFNGCTS DDLLMQQRIG WVGANARLRR EDCEFVKHDK LFSKWKILIG PSDWSDYATG 60 KIGIERCQVQ NLPDFNLGPG VYELGVTAPS WVPTLHSKRP RSLRREDVIA VYVGQAVNIR 120 QRLHKYGQTG AHLEGSRSFA TSCQGDDGSV SGGSSTPRTW NGGGDAAKVA AEIGPRLFSE 180 AFALGSSIAF RWAHTDSKVV AEQVESELLA VFDYAWNKGI NGTRRSRDIL AKLFMAWPTN 240 NPSLCNHSVF SGRRGMICFG PNAVGIKVAL RKPQESNKSV MGNMGNLCFL TTMQPQGPVN 300 TRTTQGGSLK VPRCNVVTNN GLPCNAPSLG GHRRCPQHKG LRLRENSYPL RKPVEVVSAG 360 RSCLSNTFLR RQTSPIIKTI KEHRNAVSAK EETSGERKRP PSLSFNTWMK VETERIHDSL 420 EYAPLPVDSG MRR*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MGFMFNGCTS DDLLMQQRIG WVGANARLRR EDCEFVKHDK LFSKWKILIG PSDWSDYATG  60
KIGIERCQVQ NLPDFNLGPG VYELGVTAPS WVPTLHSKRP RSLRREDVIA VYVGQAVNIR  120
QRLHKYGQTG AHLEGSRSFA TSCQGDDGSV SGGSSTPRTW NGGGDAAKVA AEIGPRLFSE  180
AFALGSSIAF RWAHTDSKVV AEQVESELLA VFDYAWNKGI NGTRRSRDIL AKLFMAWPTN  240
NPSLCNHSVF SGRRGMICFG PNAVGIKVAL RKPQESNKSV MGNMGNLCFL TTMQPQGPVN  300
TRTTQGGSLK VPRCNVVTNN GLPCNAPSLG GHRRCPQHKG LRLRENSYPL RKPVEVVSAG  360
RSCLSNTFLR RQTSPIIKTI KEHRNAVSAK EETSGERKRP PSLSFNTWMK VETERIHDSL  420
EYAPLPVDSG MRR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024372799.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like isoform X1
Refseq	XP_024372800.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like isoform X1
TrEMBL	A0A2K1KMU3	0.0	A0A2K1KMU3_PHYPA; Uncharacterized protein
STRING	PP1S190_44V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	3e-46	effector of transcription2

Link Out ? help Back to Top
Phytozome	Pp3c4_9790V3.4.p
Entrez Gene	5938568

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]