PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_9790V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | HRT-like | ||||||||
Protein Properties | Length: 410aa MW: 44896.1 Da PI: 10.2037 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 29.3 | 1.4e-09 | 314 | 342 | 2 | 30 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 C v +++G +C+++ g RC +HKG R Pp3c4_9790V3.3.p 314 CNVVTNNGLPCNAPSLGGHRRCPQHKGLR 342 99**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00719 | 3.55E-4 | 103 | 143 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MGFMFNGCTS DDLLMQQRIG WVGANARLRR EDCEFVKHDK LFSKWKILIG PSDWSDYATG 60 KIGIERCQVQ NLPDFNLGPG VYELGVTAPS WVPTLHSKRP RSLRREDVIA VYVGQAVNIR 120 QRLHKYGQTG AHLEGSRSFA TSCQGDDGSV SGGSSTPRTW NGGGDAAKVA AEIGPRLFSE 180 AFALGSSIAF RWAHTDSKVV AEQVESELLA VFDYAWNKGI NGTRRSRDIL AKLFMAWPTN 240 NPSLCNHSVF SGRRGMICFG PNAVGIKVAL RKPQESNKSV MGNMGNLCFL TTMQPQGPVN 300 TRTTQGGSLK VPRCNVVTNN GLPCNAPSLG GHRRCPQHKG LRLRENSYPL RKPVEVVSAG 360 RSCLSNTFLR RQTSPIIKTI KEHRNAVSAK EETSGTQLYN TLYSASYGT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372801.1 | 0.0 | protein EFFECTOR OF TRANSCRIPTION 2-like isoform X2 | ||||
TrEMBL | A0A2K1KMU3 | 0.0 | A0A2K1KMU3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S190_44V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 2e-46 | effector of transcription2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_9790V3.3.p |