PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c4_7100V3.2.p

Common Name

PHYPADRAFT_167323

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB

Protein Properties

Length: 2608aa MW: 279494 Da PI: 5.9187

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c4_7100V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32	2.8e-10	1204	1247	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT E el+ +av ++G++ +++Ia+++g ++++ qcks++ k Pp3c4_7100V3.2.p 1204 QWTDKERELFTEAVSLFGKD-FESIAAHVGSTKSEGQCKSFFSKT 1247 5***************99.*****99*******9886 PP
2	Myb_DNA-binding	31.6	3.7e-10	1678	1719	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e ++d ++ +G++ W++ ++++ +++l q+k ++q+ Pp3c4_7100V3.2.p 1678 SWTQEEKEVFADIIRNYGKD-WTRLHECLP-TKSLTQIKTYFQN 1719 7***************99.*****.**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.94E-13	950	1013	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-4	957	1006	IPR009057	Homeodomain-like
PROSITE profile	PS51293	17.687	962	1013	IPR017884	SANT domain
SMART	SM00717	5.8E-8	963	1011	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	17.555	1200	1252	IPR017884	SANT domain
SMART	SM00717	6.2E-9	1201	1250	IPR001005	SANT/Myb domain
Pfam	PF00249	6.3E-9	1204	1246	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-5	1204	1249	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.72E-10	1204	1255	IPR009057	Homeodomain-like
CDD	cd00167	6.08E-6	1205	1244	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.1E-7	1671	1720	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.59E-11	1671	1723	IPR009057	Homeodomain-like
PROSITE profile	PS51293	8.335	1674	1725	IPR017884	SANT domain
SMART	SM00717	3.6E-8	1675	1723	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-7	1678	1719	IPR001005	SANT/Myb domain
CDD	cd00167	7.54E-6	1678	1721	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 2608 aa Download sequence Send to blast
MYSPGRGDAR ATAPPNARDS STSMPIDHSS AWQREPYNRD VRLDRGDRDR TIGGKREWSS 60 DRASPGAPYQ RGFGGLHSVN GNLGPPNKRR LNGRHSGFHT ENRRYGSAGY RGEPPFGSIV 120 PLDNGLARKL DRDSFYPGSG CLVTNTGFSN GPGIDHRSKE LEEKLKLGSF LSSGNGRDGG 180 ASGGHDQNGR PFPSQVLTEV ENTSWERERS KGLVGNGWES SQRSEREHRE RLLGKAESYS 240 RREGKFSQFE GGKDSSQVDQ DLELRKLDRC GSSSWDSFSG DTVCESKLSV HGLDWRRKER 300 STSDCLSRSA SYVASNGGTK ESMVRSQGLD VSGRASSPHR SPKSKPPSAR VEVSRDDGNH 360 PSPPKRPRLG WGQGLAKYEK KKVVETDENV VSGSVGSVSG GGRSSITSVI SGPTTEVVQT 420 QDLQMAEDST VSVVSKLAPS PSLTPSVSLL PQTLESVSKP CLESPGVTRE DLNKSYVKAA 480 NGIDLPTLTA TSPGSRVEDS VTNADLFAAT ECSLELSVRQ SDSCEPVERP TALKESSSCR 540 ASPAAPCSVE QCCGLEVTQE VCSTGDTTWW SKEDILQRVE KLESEIEQVE RELATLEQFR 600 SLKNDAPTPV PETFEDSADK DTGTELEPGK NGHHVMGQDA VVLHAGSMEC RDDSQPLLAS 660 SPNRICSVSP ECISHSVSSL ETGAAVGAGP PMCNQEGQSH EGEKEATSDQ TMVESEGEGS 720 LVSSPSAEVY LPHMTHRERA GVKVRMSKSA IAEKESSDAA MVVGDVEAVA RGLIGENKDQ 780 ARHASEAFLH LLSQGGRGEG KVYSCPVEAP VWKENVERHV RNQEKMLEKI AERRQSARFV 840 EQVLTIKFRA LKDAWRQEQF GTSQQQRGTK PVRRWEAEKR GGTAGCHRSS LRLRPVQAGG 900 GKLEAQSEES MKRVMVEPVV GPLRPALKMP AMILGERERL ARRFESNNAL VEDPVRVESE 960 RKSINPWSAE ERRVFLEKFA VYNKNFSKIA SHLEYKTTAD CVEFYYRNQK SEDFEKIRRR 1020 QQLKKRRDYS RLGGSFLSTG LQPNSRQREA NIDARSEGWN MQTSGAVSTV CQITVGAKAA 1080 RSSTHHKPLE RQRTSSSLDP GSLPAVVEIA KSTSGKESRP SGIPPLPSGA AGSGTTGSCS 1140 LSSATAASVK VSRERTSVKS NWNGGSAVAR SGTKEQQMSG PKGARSVNIR RGLTTSAGEE 1200 ANAQWTDKER ELFTEAVSLF GKDFESIAAH VGSTKSEGQC KSFFSKTRKR LRLDQLVEKY 1260 QAALNFRADA AVAESPEFID VQMEEVPGAA AEVVLVASLE ANIYPSLGEE KVWNEATESG 1320 KVEEVANDVS VQATEAVEAE MCKDIAAEKT VEEESYEDVV VAKAVEEGLC EGVAIERAGK 1380 EEIFDNAAVH KAVEEVLSED VGVEKAVEDR SVEAKGVEVE CTPGKGVEHQ AVKDEVVDDE 1440 TVEDVAEEGV VGVIEVVETV DFVGVSMDLT VESAVCPPES PDIVEDVKKA EADVGAGACS 1500 MNECDTGEAE DVFAACIKAE PVVVDEEVVS EPLTVDAGEE LPAGNSSGSS ADCGMQEEGD 1560 AVEVAKGAES VVESVKREVD AGDDKGLGTV VATSTLAAEE QLVEASGAVD VKHEAGSPQV 1620 AVSTGTESGS CAIGAEGACH SGKAAYATTS SMHGSQQCRE KSGRVGSGEA KPRREPTSWT 1680 QEEKEVFADI IRNYGKDWTR LHECLPTKSL TQIKTYFQNS KAKLGLVNSE GVSVGGGRGS 1740 GSRKRKAEEV DNMSNNVGCV SGGNESKCGS VSGGDVDGGG QKVKGGMGDP PSMSVSAGMG 1800 TIPVGLEGLA YPFFGQRAED QMALHQFMRQ LQLCNPNGLP QNIPPMLYPL LQQQGLGVFP 1860 YPGLQRAGPP NLQQQFAASM SQKTSQSMGL QLALQGPGVG QQSGAVDLHQ QGAHQLQNSQ 1920 AARSQQQLLA NMMQQAAAQQ AAAQLQQQQY QYSKSVVHPQ QQVMVLQPGQ VSQRQQQLVS 1980 QQVGHHPQVQ QVCQAQESSS VHPVGSESLG VNHPDQLTFH LKQLHEQQQQ QAYIQQPQFQ 2040 RAVHLVQKQQ QQQHSQHDLA ESNSQGHIHQ HHSCHTSPVP SVAVPKPKGL MISPQQPTAT 2100 FSAPLLQQGG SIHRQDQQPQ HGVSMTLFSG NGGSSLSGNV GDVSNYHGEL GELRENCSDE 2160 GAAKAREFSR ADLHQMSAAV QRVKPLQAAV PPVPSSTPAT ESPQSRPVDV KLFGQSLLSQ 2220 PTCSGALQSA ARASLPTADK VSLRESAVYT TSSSPVTSMS VPAATGSKAY AKEASFSGVP 2280 AMPDGRQGGW PSTGYSVITE ARKNVNGMRP QVGPVWKSKE GELELHNIQE GRMSRGARRA 2340 EPEQNVPTIT HKLYDHEQSR SDLMHSRSEA HLSVNNFGDS ANEQGGGFPS SSGEGLGADY 2400 ERKSESTVLD SDGCERGSTM CSRGSRALAD SFAMQTIGSL ANGSQISRTV MNALVAFADL 2460 QSRNLQSFSS TGSPRLEDHQ WESLVRQAAH GAAVESLKAH PSVGRGGPSG APQAHLSGGD 2520 LLQQCVRDGG MYFTQHYPRL ASQPGVSSGA WNAGAGLMNP SDVQRVLVSP AFSSFLPGAL 2580 SRAPPAAEEH LGSTKSRDPD NGGGGLR*

Sequence ? help Back to Top

Protein Sequence Length: 2608 aa Download sequence Send to blast

MYSPGRGDAR ATAPPNARDS STSMPIDHSS AWQREPYNRD VRLDRGDRDR TIGGKREWSS  60
DRASPGAPYQ RGFGGLHSVN GNLGPPNKRR LNGRHSGFHT ENRRYGSAGY RGEPPFGSIV  120
PLDNGLARKL DRDSFYPGSG CLVTNTGFSN GPGIDHRSKE LEEKLKLGSF LSSGNGRDGG  180
ASGGHDQNGR PFPSQVLTEV ENTSWERERS KGLVGNGWES SQRSEREHRE RLLGKAESYS  240
RREGKFSQFE GGKDSSQVDQ DLELRKLDRC GSSSWDSFSG DTVCESKLSV HGLDWRRKER  300
STSDCLSRSA SYVASNGGTK ESMVRSQGLD VSGRASSPHR SPKSKPPSAR VEVSRDDGNH  360
PSPPKRPRLG WGQGLAKYEK KKVVETDENV VSGSVGSVSG GGRSSITSVI SGPTTEVVQT  420
QDLQMAEDST VSVVSKLAPS PSLTPSVSLL PQTLESVSKP CLESPGVTRE DLNKSYVKAA  480
NGIDLPTLTA TSPGSRVEDS VTNADLFAAT ECSLELSVRQ SDSCEPVERP TALKESSSCR  540
ASPAAPCSVE QCCGLEVTQE VCSTGDTTWW SKEDILQRVE KLESEIEQVE RELATLEQFR  600
SLKNDAPTPV PETFEDSADK DTGTELEPGK NGHHVMGQDA VVLHAGSMEC RDDSQPLLAS  660
SPNRICSVSP ECISHSVSSL ETGAAVGAGP PMCNQEGQSH EGEKEATSDQ TMVESEGEGS  720
LVSSPSAEVY LPHMTHRERA GVKVRMSKSA IAEKESSDAA MVVGDVEAVA RGLIGENKDQ  780
ARHASEAFLH LLSQGGRGEG KVYSCPVEAP VWKENVERHV RNQEKMLEKI AERRQSARFV  840
EQVLTIKFRA LKDAWRQEQF GTSQQQRGTK PVRRWEAEKR GGTAGCHRSS LRLRPVQAGG  900
GKLEAQSEES MKRVMVEPVV GPLRPALKMP AMILGERERL ARRFESNNAL VEDPVRVESE  960
RKSINPWSAE ERRVFLEKFA VYNKNFSKIA SHLEYKTTAD CVEFYYRNQK SEDFEKIRRR  1020
QQLKKRRDYS RLGGSFLSTG LQPNSRQREA NIDARSEGWN MQTSGAVSTV CQITVGAKAA  1080
RSSTHHKPLE RQRTSSSLDP GSLPAVVEIA KSTSGKESRP SGIPPLPSGA AGSGTTGSCS  1140
LSSATAASVK VSRERTSVKS NWNGGSAVAR SGTKEQQMSG PKGARSVNIR RGLTTSAGEE  1200
ANAQWTDKER ELFTEAVSLF GKDFESIAAH VGSTKSEGQC KSFFSKTRKR LRLDQLVEKY  1260
QAALNFRADA AVAESPEFID VQMEEVPGAA AEVVLVASLE ANIYPSLGEE KVWNEATESG  1320
KVEEVANDVS VQATEAVEAE MCKDIAAEKT VEEESYEDVV VAKAVEEGLC EGVAIERAGK  1380
EEIFDNAAVH KAVEEVLSED VGVEKAVEDR SVEAKGVEVE CTPGKGVEHQ AVKDEVVDDE  1440
TVEDVAEEGV VGVIEVVETV DFVGVSMDLT VESAVCPPES PDIVEDVKKA EADVGAGACS  1500
MNECDTGEAE DVFAACIKAE PVVVDEEVVS EPLTVDAGEE LPAGNSSGSS ADCGMQEEGD  1560
AVEVAKGAES VVESVKREVD AGDDKGLGTV VATSTLAAEE QLVEASGAVD VKHEAGSPQV  1620
AVSTGTESGS CAIGAEGACH SGKAAYATTS SMHGSQQCRE KSGRVGSGEA KPRREPTSWT  1680
QEEKEVFADI IRNYGKDWTR LHECLPTKSL TQIKTYFQNS KAKLGLVNSE GVSVGGGRGS  1740
GSRKRKAEEV DNMSNNVGCV SGGNESKCGS VSGGDVDGGG QKVKGGMGDP PSMSVSAGMG  1800
TIPVGLEGLA YPFFGQRAED QMALHQFMRQ LQLCNPNGLP QNIPPMLYPL LQQQGLGVFP  1860
YPGLQRAGPP NLQQQFAASM SQKTSQSMGL QLALQGPGVG QQSGAVDLHQ QGAHQLQNSQ  1920
AARSQQQLLA NMMQQAAAQQ AAAQLQQQQY QYSKSVVHPQ QQVMVLQPGQ VSQRQQQLVS  1980
QQVGHHPQVQ QVCQAQESSS VHPVGSESLG VNHPDQLTFH LKQLHEQQQQ QAYIQQPQFQ  2040
RAVHLVQKQQ QQQHSQHDLA ESNSQGHIHQ HHSCHTSPVP SVAVPKPKGL MISPQQPTAT  2100
FSAPLLQQGG SIHRQDQQPQ HGVSMTLFSG NGGSSLSGNV GDVSNYHGEL GELRENCSDE  2160
GAAKAREFSR ADLHQMSAAV QRVKPLQAAV PPVPSSTPAT ESPQSRPVDV KLFGQSLLSQ  2220
PTCSGALQSA ARASLPTADK VSLRESAVYT TSSSPVTSMS VPAATGSKAY AKEASFSGVP  2280
AMPDGRQGGW PSTGYSVITE ARKNVNGMRP QVGPVWKSKE GELELHNIQE GRMSRGARRA  2340
EPEQNVPTIT HKLYDHEQSR SDLMHSRSEA HLSVNNFGDS ANEQGGGFPS SSGEGLGADY  2400
ERKSESTVLD SDGCERGSTM CSRGSRALAD SFAMQTIGSL ANGSQISRTV MNALVAFADL  2460
QSRNLQSFSS TGSPRLEDHQ WESLVRQAAH GAAVESLKAH PSVGRGGPSG APQAHLSGGD  2520
LLQQCVRDGG MYFTQHYPRL ASQPGVSSGA WNAGAGLMNP SDVQRVLVSP AFSSFLPGAL  2580
SRAPPAAEEH LGSTKSRDPD NGGGGLR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	1e-15	921	1015	1	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	1e-15	921	1015	1	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.12965	0.0	protonema

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024373742.1	0.0	uncharacterized protein LOC112281450 isoform X1
TrEMBL	A0A2K1KMJ2	0.0	A0A2K1KMJ2_PHYPA; Uncharacterized protein
STRING	PP1S143_55V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	7e-35	MYB family protein

Link Out ? help Back to Top
Phytozome	Pp3c4_7100V3.2.p
Entrez Gene	5935093

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]