PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_7100V3.1.p | ||||||||
Common Name | PHYPADRAFT_167323 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB | ||||||||
Protein Properties | Length: 2608aa MW: 279494 Da PI: 5.9187 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32 | 2.8e-10 | 1204 | 1247 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT E el+ +av ++G++ +++Ia+++g ++++ qcks++ k Pp3c4_7100V3.1.p 1204 QWTDKERELFTEAVSLFGKD-FESIAAHVGSTKSEGQCKSFFSKT 1247 5*****************99.*********99*********9886 PP | |||||||
2 | Myb_DNA-binding | 31.6 | 3.7e-10 | 1678 | 1719 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e ++d ++ +G++ W++ ++++ +++l q+k ++q+ Pp3c4_7100V3.1.p 1678 SWTQEEKEVFADIIRNYGKD-WTRLHECLP-TKSLTQIKTYFQN 1719 7*****************99.*********.************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.94E-13 | 950 | 1013 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-4 | 957 | 1006 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 17.687 | 962 | 1013 | IPR017884 | SANT domain |
SMART | SM00717 | 5.8E-8 | 963 | 1011 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 17.555 | 1200 | 1252 | IPR017884 | SANT domain |
SMART | SM00717 | 6.2E-9 | 1201 | 1250 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-9 | 1204 | 1246 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-5 | 1204 | 1249 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.72E-10 | 1204 | 1255 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.08E-6 | 1205 | 1244 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-7 | 1671 | 1720 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.59E-11 | 1671 | 1723 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 8.335 | 1674 | 1725 | IPR017884 | SANT domain |
SMART | SM00717 | 3.6E-8 | 1675 | 1723 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-7 | 1678 | 1719 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.54E-6 | 1678 | 1721 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 2608 aa Download sequence Send to blast |
MYSPGRGDAR ATAPPNARDS STSMPIDHSS AWQREPYNRD VRLDRGDRDR TIGGKREWSS 60 DRASPGAPYQ RGFGGLHSVN GNLGPPNKRR LNGRHSGFHT ENRRYGSAGY RGEPPFGSIV 120 PLDNGLARKL DRDSFYPGSG CLVTNTGFSN GPGIDHRSKE LEEKLKLGSF LSSGNGRDGG 180 ASGGHDQNGR PFPSQVLTEV ENTSWERERS KGLVGNGWES SQRSEREHRE RLLGKAESYS 240 RREGKFSQFE GGKDSSQVDQ DLELRKLDRC GSSSWDSFSG DTVCESKLSV HGLDWRRKER 300 STSDCLSRSA SYVASNGGTK ESMVRSQGLD VSGRASSPHR SPKSKPPSAR VEVSRDDGNH 360 PSPPKRPRLG WGQGLAKYEK KKVVETDENV VSGSVGSVSG GGRSSITSVI SGPTTEVVQT 420 QDLQMAEDST VSVVSKLAPS PSLTPSVSLL PQTLESVSKP CLESPGVTRE DLNKSYVKAA 480 NGIDLPTLTA TSPGSRVEDS VTNADLFAAT ECSLELSVRQ SDSCEPVERP TALKESSSCR 540 ASPAAPCSVE QCCGLEVTQE VCSTGDTTWW SKEDILQRVE KLESEIEQVE RELATLEQFR 600 SLKNDAPTPV PETFEDSADK DTGTELEPGK NGHHVMGQDA VVLHAGSMEC RDDSQPLLAS 660 SPNRICSVSP ECISHSVSSL ETGAAVGAGP PMCNQEGQSH EGEKEATSDQ TMVESEGEGS 720 LVSSPSAEVY LPHMTHRERA GVKVRMSKSA IAEKESSDAA MVVGDVEAVA RGLIGENKDQ 780 ARHASEAFLH LLSQGGRGEG KVYSCPVEAP VWKENVERHV RNQEKMLEKI AERRQSARFV 840 EQVLTIKFRA LKDAWRQEQF GTSQQQRGTK PVRRWEAEKR GGTAGCHRSS LRLRPVQAGG 900 GKLEAQSEES MKRVMVEPVV GPLRPALKMP AMILGERERL ARRFESNNAL VEDPVRVESE 960 RKSINPWSAE ERRVFLEKFA VYNKNFSKIA SHLEYKTTAD CVEFYYRNQK SEDFEKIRRR 1020 QQLKKRRDYS RLGGSFLSTG LQPNSRQREA NIDARSEGWN MQTSGAVSTV CQITVGAKAA 1080 RSSTHHKPLE RQRTSSSLDP GSLPAVVEIA KSTSGKESRP SGIPPLPSGA AGSGTTGSCS 1140 LSSATAASVK VSRERTSVKS NWNGGSAVAR SGTKEQQMSG PKGARSVNIR RGLTTSAGEE 1200 ANAQWTDKER ELFTEAVSLF GKDFESIAAH VGSTKSEGQC KSFFSKTRKR LRLDQLVEKY 1260 QAALNFRADA AVAESPEFID VQMEEVPGAA AEVVLVASLE ANIYPSLGEE KVWNEATESG 1320 KVEEVANDVS VQATEAVEAE MCKDIAAEKT VEEESYEDVV VAKAVEEGLC EGVAIERAGK 1380 EEIFDNAAVH KAVEEVLSED VGVEKAVEDR SVEAKGVEVE CTPGKGVEHQ AVKDEVVDDE 1440 TVEDVAEEGV VGVIEVVETV DFVGVSMDLT VESAVCPPES PDIVEDVKKA EADVGAGACS 1500 MNECDTGEAE DVFAACIKAE PVVVDEEVVS EPLTVDAGEE LPAGNSSGSS ADCGMQEEGD 1560 AVEVAKGAES VVESVKREVD AGDDKGLGTV VATSTLAAEE QLVEASGAVD VKHEAGSPQV 1620 AVSTGTESGS CAIGAEGACH SGKAAYATTS SMHGSQQCRE KSGRVGSGEA KPRREPTSWT 1680 QEEKEVFADI IRNYGKDWTR LHECLPTKSL TQIKTYFQNS KAKLGLVNSE GVSVGGGRGS 1740 GSRKRKAEEV DNMSNNVGCV SGGNESKCGS VSGGDVDGGG QKVKGGMGDP PSMSVSAGMG 1800 TIPVGLEGLA YPFFGQRAED QMALHQFMRQ LQLCNPNGLP QNIPPMLYPL LQQQGLGVFP 1860 YPGLQRAGPP NLQQQFAASM SQKTSQSMGL QLALQGPGVG QQSGAVDLHQ QGAHQLQNSQ 1920 AARSQQQLLA NMMQQAAAQQ AAAQLQQQQY QYSKSVVHPQ QQVMVLQPGQ VSQRQQQLVS 1980 QQVGHHPQVQ QVCQAQESSS VHPVGSESLG VNHPDQLTFH LKQLHEQQQQ QAYIQQPQFQ 2040 RAVHLVQKQQ QQQHSQHDLA ESNSQGHIHQ HHSCHTSPVP SVAVPKPKGL MISPQQPTAT 2100 FSAPLLQQGG SIHRQDQQPQ HGVSMTLFSG NGGSSLSGNV GDVSNYHGEL GELRENCSDE 2160 GAAKAREFSR ADLHQMSAAV QRVKPLQAAV PPVPSSTPAT ESPQSRPVDV KLFGQSLLSQ 2220 PTCSGALQSA ARASLPTADK VSLRESAVYT TSSSPVTSMS VPAATGSKAY AKEASFSGVP 2280 AMPDGRQGGW PSTGYSVITE ARKNVNGMRP QVGPVWKSKE GELELHNIQE GRMSRGARRA 2340 EPEQNVPTIT HKLYDHEQSR SDLMHSRSEA HLSVNNFGDS ANEQGGGFPS SSGEGLGADY 2400 ERKSESTVLD SDGCERGSTM CSRGSRALAD SFAMQTIGSL ANGSQISRTV MNALVAFADL 2460 QSRNLQSFSS TGSPRLEDHQ WESLVRQAAH GAAVESLKAH PSVGRGGPSG APQAHLSGGD 2520 LLQQCVRDGG MYFTQHYPRL ASQPGVSSGA WNAGAGLMNP SDVQRVLVSP AFSSFLPGAL 2580 SRAPPAAEEH LGSTKSRDPD NGGGGLR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 1e-15 | 921 | 1015 | 1 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 1e-15 | 921 | 1015 | 1 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.12965 | 0.0 | protonema |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024373742.1 | 0.0 | uncharacterized protein LOC112281450 isoform X1 | ||||
TrEMBL | A0A2K1KMJ2 | 0.0 | A0A2K1KMJ2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S143_55V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3215 | 17 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 7e-35 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_7100V3.1.p |
Entrez Gene | 5935093 |
Publications ? help Back to Top | |||
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