PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_7080V3.1.p
Common NamePHYPADRAFT_167322
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family CO-like
Protein Properties Length: 476aa    MW: 52246.6 Da    PI: 6.3052
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_7080V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.81.9e-072669340
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                       r C+ ++ ++++++C  ++ +lC+ C ++ H+       H++v
  Pp3c4_7080V3.1.p 26 SRACDVCGLHRARWYCSVDNAHLCRRCDQNVHSAnalalhHERV 69
                      578*****999*********************668888877766 PP
2CCT68.71.5e-23428471144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Re +++RYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvkq+
  Pp3c4_7080V3.1.p 428 REFRVMRYKEKRRTRLFSKKIRYEVRKLNAERRPRMKGRFVKQT 471
                       8999**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.2962471IPR000315B-box-type zinc finger
SMARTSM003362.1E-42471IPR000315B-box-type zinc finger
PfamPF006437.8E-62669IPR000315B-box-type zinc finger
CDDcd000212.61E-92771No hitNo description
PROSITE profilePS5101715.735428470IPR010402CCT domain
PfamPF062031.3E-17428470IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MAGGGGIKGA VNNNVATAMA IAGRDSRACD VCGLHRARWY CSVDNAHLCR RCDQNVHSAN  60
ALALHHERVR LDLQGNALHT PRKALKGNTS APQNSLKSAA QMDHAAPSRK SFRQSRRPNT  120
DASPPNSHKI NRRGKEKSDS SHEVPNFVTV NIHESPFSFT HDSATAMSIA EYCKGRAAAA  180
AAMAADVDTN EELSSGDSDQ YLVPNGYLDD FESATVPTPG CRQQGCDPSD DAASNDALDD  240
GEGKDQYDSG AFDQTNGLEF KRGSDQDRIN EKYRLGFSEV VGMRDADDFE GESGYTEGEG  300
EVEDEAYDQS CAYGDPERQR VSPFVKDLKS EYDVLDRLDL IKREVAAVLR CSLEAQEKKS  360
APPPLLRLNF DDVLSAWSDR SLWTDGRRPQ TVPDDSSEAV GGTDVGLVPD INTQYAQGAT  420
LAAGDKGREF RVMRYKEKRR TRLFSKKIRY EVRKLNAERR PRMKGRFVKQ TPGGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1438454RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.13230.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373406.10.0zinc finger protein CONSTANS-LIKE 6-like
TrEMBLA9SZT10.0A9SZT1_PHYPA; Predicted protein
STRINGPP1S143_52V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.16e-26B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]