PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_6990V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB | ||||||||
Protein Properties | Length: 2593aa MW: 278171 Da PI: 5.7481 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.4 | 8e-09 | 1215 | 1258 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT E el+ +av+++ + +++Ia+++g ++++ qcks++ k Pp3c4_6990V3.3.p 1215 QWTDKERELFTEAVRLFRRD-FESIAAHVGSTKSEGQCKSFFSKT 1258 5*****************77.*********99*********9886 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 1709 | 1750 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e ++d ++ +G++ W++ ++++ +++l q+k ++q+ Pp3c4_6990V3.3.p 1709 SWTQEEKEVFADIIRNHGKD-WTRLHECLP-TKSLTQIKTYFQN 1750 7*****************99.*********.************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.76E-13 | 961 | 1024 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.0E-5 | 968 | 1017 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 17.179 | 973 | 1024 | IPR017884 | SANT domain |
SMART | SM00717 | 1.1E-7 | 974 | 1022 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 15.727 | 1211 | 1263 | IPR017884 | SANT domain |
SMART | SM00717 | 1.3E-7 | 1212 | 1261 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-7 | 1215 | 1257 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-4 | 1215 | 1260 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.58E-8 | 1215 | 1266 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.78E-5 | 1216 | 1255 | No hit | No description |
SuperFamily | SSF46689 | 2.59E-10 | 1704 | 1754 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 8.258 | 1705 | 1756 | IPR017884 | SANT domain |
SMART | SM00717 | 3.8E-8 | 1706 | 1754 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-7 | 1707 | 1751 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.1E-8 | 1709 | 1750 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.57E-6 | 1709 | 1752 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 2593 aa Download sequence Send to blast |
MYSPGRGDAR ATALPNARDS STSMPIDHSS AWQREPYNRD VRLDRGDRER TIGGKREWNS 60 DRASPGAPYQ RGFGGLHPVN GYLGPPSKRR LNGRHIGFHA GNGRYGSAGQ RGEPSFGSFV 120 PLENGLAPKF EQESFYLGSG RPVVNTGFSS GPGLDYRSKE LGERQRKGSF LTSGDGRDGG 180 SSGVNVQHVR LYPSQVLTEV ENTSWERERP KGQDGNGWES SQRSEREHRE RLLGKAESFS 240 RREGRFSQFE EGRERSQVDK DSDGSKLDRC GSSSWDRCSG DTMCGSKVSA NGFDWRRKER 300 STSVSASRNA SNGCSKESVV RPPVLDVSGS PSSPQLSLRS TPSALVEVSR DDGNHPSPAK 360 RPRLGWGQGL AKYEKKNEVV ETDDIFVSGS VDSASGSKRS SVTAVSGVKT EVVQMLGLQA 420 AEESSVSVIS KLSTLPLPKV SSSPLQKALE SVSKSSVESR AVEEVLGKAC EMVADEAVRS 480 SSNFTTPGVR AEDLVKTADV CALTECSLEL SVRQSYSWEP VEKPTAWKES NSCQASPTVP 540 CSVEQCCGVE VTQEVCSTGD TTWWSKEDIL QRVEKLESEI EQVERELSTS KRFGSLRNDT 600 HMPVPEIFEN SANADLGTKL EPGDYGPQVL ADNAVSSHAG SMECRDSSQL ILVSFPNRIC 660 SVSAECISHS VSSLETGAAV GAGPPMCNQA MGSKHRNMEN EVLVMEEWQS HEGEKEATSD 720 QTMVESEGEG SLVSSPSAEV YLPHMTLRER AGVEVRVSKS AIAKMESSDA AMVVGDVEAV 780 ARGLIGENKD QARHASEAFL HLLSQGGRGE GKVYSCPVEA PVWKENVERH VRNQEKMLEK 840 IAERRQSARF VEQVLTIKFR ALKDAWRQEQ FGTSQQQRGT KPVRRWEAEK RGGTAGCHRS 900 SLRLRPVQAG GGKLEAQSEE SMKRVMVEPV VGPLRPALKM PAMILGERER LARRFESNNA 960 LVEDPVRVES ERKSMNPWSA EERRVFLEKF AVYNKNFSKI ASHLEYKTTA DCVEFYCRNQ 1020 KSEDFEKIRR RQQLQKRRDC SRLGGSFLST GLQPNSRQRE ANIDARSEGW NMQTSGAVST 1080 VCQITVGAKA ARSSTHHKPL ERQRTSSSLD PGSLPAVVEI AKSTSGKESR PSGIPPLPSG 1140 AAGSGTTGSC SLSSATAASV KVSRERTSVK SNWNGGSAVA RSGTKEQQMS GPKGARSVNI 1200 RRGLTTSAGE ETDAQWTDKE RELFTEAVRL FRRDFESIAA HVGSTKSEGQ CKSFFSKTRK 1260 RLRLDQLVEK HQAALNFSAD AAVAESPECI DVQMEEVPGA AAEVVLVASL EANIYPSLGE 1320 EKVWNEATES GKVEEVANDV SIQATEAVEA EMCEDIAAEK TVEEESCEDV VVAKAVEEGL 1380 CEGVAIERAG KEEIFDNAAV HKAVEEVLSE DLLDEKAMED GSIEEKAGED GSIEEKAGED 1440 GSVEVKTVEN EGVVRKAVEH GAVKDVVVDD ETVDDVAEEG VVGVIEVVET VDFVGVSMDL 1500 TVESAVCPLE SPDIVENLEK AEADVGAGAC SMNECDTGEA EDVVAACIKA EPVVVDEGVV 1560 SEPLTVDAGE ELPAGNSSGS SADCGMQEEG DAVEVAKGAE SVVESVKREV DAGDDKGLGT 1620 VVATSILASE EQIVEASGAV DVKHQAGSPQ MAVSTGTESG SCAIGAEGAC HSGKAAYATT 1680 SSMHGSQQCR EKSGRVGSGE AKSRREPTSW TQEEKEVFAD IIRNHGKDWT RLHECLPTKS 1740 LTQIKTYFQN SKAKLGLVNS EGVSVGGGRG SGSRKRKAEE VDNMSNNVGC VNGRIESKCG 1800 SVSGGDVDGG GQKVKGGMGD PPSMSVSAGM GTIPVGLEGL AYPFFGQRVE DQMALHQFIR 1860 QLQLCNPNGF PQNIPPMLHP LLQQQGLGVF PDPGLQRAGP PNLQQQFAAS MSQKTSQSMG 1920 LQLALQGPGV GQQSGAVDLH QQGAHQLLNS QAARSQQQLL ANMMQQQAAA QLQQQQHPCS 1980 KSVVHSLQQA VLLQPGQVAQ RQQQQLMSPQ VVHHSQAHQA GGQHQQYQAL LQHQQFQQTV 2040 QHFQQQQDHV QAQALIHQHH SSHAPLPPSL VSSSKSIAVM PLPQHLSKIP LAPVLQQGIA 2100 VHEERNGAGV TSSRVNEGSA GSSHCEDASI QQVESGELRG SCSNGGPRGQ DFSRAEFHQL 2160 SGAVQRAPPS QTAVPLRPSP ISATESPQTR PGDVKLFGQS LLSQPTCSAG LQSAARAAPC 2220 ATDKVSLQQS PVHTMTLSST TGTSVPAATV SKVYGSETSF GGMSSMSDGR QSIWPSLGNL 2280 GSIETRNIAN GMHLQAGPLW KSKERESKLH NMQESRMFRE ARDAEPGQST PTNSYKLQPL 2340 EHSRNIQEHS RSEGFPSLNN PGFYLNEQGG GGGFSVSSVE ASRPELERRN ESSSIGSSGC 2400 ERGPSTCGRS SRGQMDSFAM KAAGLLANGP QVPRTMMNSL MAVADLHQSR SLLSGIGSPR 2460 LEDHQCGNFI RQAANGAAVD TLKADASVGL AGPLAAPQAH LSGGDLLQQC VRDSGMYFTQ 2520 HYSHLADHPG VSPGAWYAGT GLMHPSDVQR MLVNPALNPF LLGALSRAPS AAEEHLGSIE 2580 SRDPDNGGSG LR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 7e-15 | 932 | 1026 | 1 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 7e-15 | 932 | 1026 | 1 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.17876 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024374726.1 | 0.0 | uncharacterized protein LOC112281923 isoform X1 | ||||
TrEMBL | A0A2K1KMG6 | 0.0 | A0A2K1KMG6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S143_55V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 2e-33 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_6990V3.3.p |