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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pp3c4_6990V3.2.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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| Family | MYB | ||||||||
| Protein Properties | Length: 2636aa MW: 282788 Da PI: 5.4533 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 27.3 | 8.1e-09 | 1216 | 1259 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
WT E el+ +av+++ + +++Ia+++g ++++ qcks++ k
Pp3c4_6990V3.2.p 1216 QWTDKERELFTEAVRLFRRD-FESIAAHVGSTKSEGQCKSFFSKT 1259
5*****************77.*********99*********9886 PP
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| 2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 1752 | 1793 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+WT+eE e ++d ++ +G++ W++ ++++ +++l q+k ++q+
Pp3c4_6990V3.2.p 1752 SWTQEEKEVFADIIRNHGKD-WTRLHECLP-TKSLTQIKTYFQN 1793
7*****************99.*********.************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF46689 | 5.83E-13 | 962 | 1025 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 8.1E-5 | 969 | 1018 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51293 | 17.179 | 974 | 1025 | IPR017884 | SANT domain |
| SMART | SM00717 | 1.1E-7 | 975 | 1023 | IPR001005 | SANT/Myb domain |
| PROSITE profile | PS51293 | 15.727 | 1212 | 1264 | IPR017884 | SANT domain |
| SMART | SM00717 | 1.3E-7 | 1213 | 1262 | IPR001005 | SANT/Myb domain |
| SuperFamily | SSF46689 | 1.72E-8 | 1216 | 1267 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 5.7E-4 | 1216 | 1261 | IPR009057 | Homeodomain-like |
| Pfam | PF00249 | 1.3E-7 | 1216 | 1258 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 2.83E-5 | 1217 | 1256 | No hit | No description |
| SuperFamily | SSF46689 | 2.69E-10 | 1747 | 1797 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51293 | 8.258 | 1748 | 1799 | IPR017884 | SANT domain |
| SMART | SM00717 | 3.8E-8 | 1749 | 1797 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 9.0E-7 | 1750 | 1794 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 7.70E-6 | 1752 | 1795 | No hit | No description |
| Pfam | PF00249 | 8.2E-8 | 1752 | 1793 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 2636 aa Download sequence Send to blast |
MYSPGRGDAR ATALPNARDS STSMPIDHSS AWQREPYNRD VRLDRGDRER TIGGKREWNS 60 DRASPGAPYQ RGFGGLHPVN GYLGPPSKRR LNGRHIGFHA GNGRYGSAGQ RGEPSFGSFV 120 PLENGLAPKF EQESFYLGSG RPVVNTGFSS GPGLDYRSKE LGERQRKGSF LTSGDGRDGG 180 SSGVNVQHVR LYPSQVLTEV ENTSWERERP KGQDGNGWES SQRSEREHRE RLLGKAESFS 240 RREGRFSQFE EGRERSQVDK DSDGSKLDRC GSSSWDRCSG DTMCGSKVSA NGFDWRRKER 300 STSVSASRNA SNGCSKESVV RPPVLDVSGS PSSPQLSLRS TPSALVEVSR DDGNHPSPAK 360 RPRLGWGQGL AKYEKKNEVV ETDDIFVSGS VDSASGSKRS SVTAVSGVKT EVVQMLGLQA 420 AEESSVSVIS KLSTLPLPKV SSSPLQKALE TGVSKSSVES RAVEEVLGKA CEMVADEAVR 480 SSSNFTTPGV RAEDLVKTAD VCALTECSLE LSVRQSYSWE PVEKPTAWKE SNSCQASPTV 540 PCSVEQCCGV EVTQEVCSTG DTTWWSKEDI LQRVEKLESE IEQVERELST SKRFGSLRND 600 THMPVPEIFE NSANADLGTK LEPGDYGPQV LADNAVSSHA GSMECRDSSQ LILVSFPNRI 660 CSVSAECISH SVSSLETGAA VGAGPPMCNQ AMGSKHRNME NEVLVMEEWQ SHEGEKEATS 720 DQTMVESEGE GSLVSSPSAE VYLPHMTLRE RAGVEVRVSK SAIAKMESSD AAMVVGDVEA 780 VARGLIGENK DQARHASEAF LHLLSQGGRG EGKVYSCPVE APVWKENVER HVRNQEKMLE 840 KIAERRQSAR FVEQVLTIKF RALKDAWRQE QFGTSQQQRG TKPVRRWEAE KRGGTAGCHR 900 SSLRLRPVQA GGGKLEAQSE ESMKRVMVEP VVGPLRPALK MPAMILGERE RLARRFESNN 960 ALVEDPVRVE SERKSMNPWS AEERRVFLEK FAVYNKNFSK IASHLEYKTT ADCVEFYCRN 1020 QKSEDFEKIR RRQQLQKRRD CSRLGGSFLS TGLQPNSRQR EANIDARSEG WNMQTSGAVS 1080 TVCQITVGAK AARSSTHHKP LERQRTSSSL DPGSLPAVVE IAKSTSGKES RPSGIPPLPS 1140 GAAGSGTTGS CSLSSATAAS VKVSRERTSV KSNWNGGSAV ARSGTKEQQM SGPKGARSVN 1200 IRRGLTTSAG EETDAQWTDK ERELFTEAVR LFRRDFESIA AHVGSTKSEG QCKSFFSKTR 1260 KRLRLDQLVE KHQAALNFSA DAAVAESPEC IDVQMEEVPG AAAEVVLVAS LEANIYPSLG 1320 EEKVWNEATE SGKVEEVAND VSIQATEAVE AEMCEDIAAE KTVEEESCED VVVAKAVEEG 1380 LCEGVAIERA GKEEIFDNAA VHKAVEEVLS EDVKVEMAVK EETVEDVAIV MAVEDALSEV 1440 VSDEKAVEEV LSEDLLDEKA MEDGSIEEKA GEDGSIEEKA GEDGSVEVKT VENEGVVRKA 1500 VEHGAVKDVV VDDETVDDVA EEGVVGVIEV VETVDFVGVS MDLTVESAVC PLESPDIVEN 1560 LEKAEADVGA GACSMNECDT GEAEDVVAAC IKAEPVVVDE GVVSEPLTVD AGEELPAGNS 1620 SGSSADCGMQ EEGDAVEVAK GAESVVESVK REVDAGDDKG LGTVVATSIL ASEEQIVEAS 1680 GAVDVKHQAG SPQMAVSTGT ESGSCAIGAE GACHSGKAAY ATTSSMHGSQ QCREKSGRVG 1740 SGEAKSRREP TSWTQEEKEV FADIIRNHGK DWTRLHECLP TKSLTQIKTY FQNSKAKLGL 1800 VNSEGVSVGG GRGSGSRKRK AEEVDNMSNN VGCVNGRIES KCGSVSGGDV DGGGQKVKGG 1860 MGDPPSMSVS AGMGTIPVGL EGLAYPFFGQ RVEDQMALHQ FIRQLQLCNP NGFPQNIPPM 1920 LHPLLQQQGL GVFPDPGLQR AGPPNLQQQF AASMSQKTSQ SMGLQLALQG PGVGQQSGAV 1980 DLHQQGAHQL LNSQAARSQQ QLLANMMQQQ AAAQLQQQQH PCSKSVVHSL QQAVLLQPGQ 2040 VAQRQQQQLM SPQVVHHSQA HQAGGQHQQY QALLQHQQFQ QTVQHFQQQQ DHVQAQALIH 2100 QHHSSHAPLP PSLVSSSKSI AVMPLPQHLS KIPLAPVLQQ GIAVHEERNG AGVTSSRVNE 2160 GSAGSSHCED ASIQQVESGE LRGSCSNGGP RGQDFSRAEF HQLSGAVQRA PPSQTAVPLR 2220 PSPISATESP QTRPGDVKLF GQSLLSQPTC SAGLQSAARA APCATDKVSL QQSPVHTMTL 2280 SSTTGTSVPA ATVSKVYGSE TSFGGMSSMS DGRQSIWPSL GNLGSIETRN IANGMHLQAG 2340 PLWKSKERES KLHNMQESRM FREARDAEPG QSTPTNSYKL QPLEHSRNIQ EHSRSEGFPS 2400 LNNPGFYLNE QGGGGGFSVS SVEASRPELE RRNESSSIGS SGCERGPSTC GRSSRGQMDS 2460 FAMKAAGLLA NGPQVPRTMM NSLMAVADLH QSRSLLSGIG SPRLEDHQCG NFIRQAANGA 2520 AVDTLKADAS VGLAGPLAAP QAHLSGGDLL QQCVRDSGMY FTQHYSHLAD HPGVSPGAWY 2580 AGTGLMHPSD VQRMLVNPAL NPFLLGALSR APSAAEEHLG SIESRDPDNG GSGLR* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4a69_C | 7e-15 | 933 | 1027 | 1 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
| 4a69_D | 7e-15 | 933 | 1027 | 1 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
| Search in ModeBase | ||||||
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Ppa.17876 | 0.0 | protonema | ||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024374726.1 | 0.0 | uncharacterized protein LOC112281923 isoform X1 | ||||
| TrEMBL | A0A2K1KMG6 | 0.0 | A0A2K1KMG6_PHYPA; Uncharacterized protein | ||||
| STRING | PP1S143_55V6.1 | 0.0 | (Physcomitrella patens) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP3215 | 17 | 25 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G52250.1 | 2e-33 | MYB family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Pp3c4_6990V3.2.p |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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