PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_6990V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB
Protein Properties Length: 2635aa    MW: 282717 Da    PI: 5.4533
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_6990V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.1e-0912151258347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47  
                         WT  E el+ +av+++  + +++Ia+++g ++++ qcks++ k 
  Pp3c4_6990V3.1.p 1215 QWTDKERELFTEAVRLFRRD-FESIAAHVGSTKSEGQCKSFFSKT 1258
                        5*****************77.*********99*********9886 PP
2Myb_DNA-binding32.81.6e-1017511792346
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46  
                        +WT+eE e ++d ++ +G++ W++  ++++ +++l q+k ++q+
  Pp3c4_6990V3.1.p 1751 SWTQEEKEVFADIIRNHGKD-WTRLHECLP-TKSLTQIKTYFQN 1792
                        7*****************99.*********.************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.83E-139611024IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-59681017IPR009057Homeodomain-like
PROSITE profilePS5129317.1799731024IPR017884SANT domain
SMARTSM007171.1E-79741022IPR001005SANT/Myb domain
PROSITE profilePS5129315.72712111263IPR017884SANT domain
SMARTSM007171.3E-712121261IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-812151266IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-412151260IPR009057Homeodomain-like
PfamPF002491.3E-712151257IPR001005SANT/Myb domain
CDDcd001672.83E-512161255No hitNo description
SuperFamilySSF466892.69E-1017461796IPR009057Homeodomain-like
PROSITE profilePS512938.25817471798IPR017884SANT domain
SMARTSM007173.8E-817481796IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-717491793IPR009057Homeodomain-like
CDDcd001677.70E-617511794No hitNo description
PfamPF002498.2E-817511792IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 2635 aa     Download sequence    Send to blast
MYSPGRGDAR ATALPNARDS STSMPIDHSS AWQREPYNRD VRLDRGDRER TIGGKREWNS  60
DRASPGAPYQ RGFGGLHPVN GYLGPPSKRR LNGRHIGFHA GNGRYGSAGQ RGEPSFGSFV  120
PLENGLAPKF EQESFYLGSG RPVVNTGFSS GPGLDYRSKE LGERQRKGSF LTSGDGRDGG  180
SSGVNVQHVR LYPSQVLTEV ENTSWERERP KGQDGNGWES SQRSEREHRE RLLGKAESFS  240
RREGRFSQFE EGRERSQVDK DSDGSKLDRC GSSSWDRCSG DTMCGSKVSA NGFDWRRKER  300
STSVSASRNA SNGCSKESVV RPPVLDVSGS PSSPQLSLRS TPSALVEVSR DDGNHPSPAK  360
RPRLGWGQGL AKYEKKNEVV ETDDIFVSGS VDSASGSKRS SVTAVSGVKT EVVQMLGLQA  420
AEESSVSVIS KLSTLPLPKV SSSPLQKALE SVSKSSVESR AVEEVLGKAC EMVADEAVRS  480
SSNFTTPGVR AEDLVKTADV CALTECSLEL SVRQSYSWEP VEKPTAWKES NSCQASPTVP  540
CSVEQCCGVE VTQEVCSTGD TTWWSKEDIL QRVEKLESEI EQVERELSTS KRFGSLRNDT  600
HMPVPEIFEN SANADLGTKL EPGDYGPQVL ADNAVSSHAG SMECRDSSQL ILVSFPNRIC  660
SVSAECISHS VSSLETGAAV GAGPPMCNQA MGSKHRNMEN EVLVMEEWQS HEGEKEATSD  720
QTMVESEGEG SLVSSPSAEV YLPHMTLRER AGVEVRVSKS AIAKMESSDA AMVVGDVEAV  780
ARGLIGENKD QARHASEAFL HLLSQGGRGE GKVYSCPVEA PVWKENVERH VRNQEKMLEK  840
IAERRQSARF VEQVLTIKFR ALKDAWRQEQ FGTSQQQRGT KPVRRWEAEK RGGTAGCHRS  900
SLRLRPVQAG GGKLEAQSEE SMKRVMVEPV VGPLRPALKM PAMILGERER LARRFESNNA  960
LVEDPVRVES ERKSMNPWSA EERRVFLEKF AVYNKNFSKI ASHLEYKTTA DCVEFYCRNQ  1020
KSEDFEKIRR RQQLQKRRDC SRLGGSFLST GLQPNSRQRE ANIDARSEGW NMQTSGAVST  1080
VCQITVGAKA ARSSTHHKPL ERQRTSSSLD PGSLPAVVEI AKSTSGKESR PSGIPPLPSG  1140
AAGSGTTGSC SLSSATAASV KVSRERTSVK SNWNGGSAVA RSGTKEQQMS GPKGARSVNI  1200
RRGLTTSAGE ETDAQWTDKE RELFTEAVRL FRRDFESIAA HVGSTKSEGQ CKSFFSKTRK  1260
RLRLDQLVEK HQAALNFSAD AAVAESPECI DVQMEEVPGA AAEVVLVASL EANIYPSLGE  1320
EKVWNEATES GKVEEVANDV SIQATEAVEA EMCEDIAAEK TVEEESCEDV VVAKAVEEGL  1380
CEGVAIERAG KEEIFDNAAV HKAVEEVLSE DVKVEMAVKE ETVEDVAIVM AVEDALSEVV  1440
SDEKAVEEVL SEDLLDEKAM EDGSIEEKAG EDGSIEEKAG EDGSVEVKTV ENEGVVRKAV  1500
EHGAVKDVVV DDETVDDVAE EGVVGVIEVV ETVDFVGVSM DLTVESAVCP LESPDIVENL  1560
EKAEADVGAG ACSMNECDTG EAEDVVAACI KAEPVVVDEG VVSEPLTVDA GEELPAGNSS  1620
GSSADCGMQE EGDAVEVAKG AESVVESVKR EVDAGDDKGL GTVVATSILA SEEQIVEASG  1680
AVDVKHQAGS PQMAVSTGTE SGSCAIGAEG ACHSGKAAYA TTSSMHGSQQ CREKSGRVGS  1740
GEAKSRREPT SWTQEEKEVF ADIIRNHGKD WTRLHECLPT KSLTQIKTYF QNSKAKLGLV  1800
NSEGVSVGGG RGSGSRKRKA EEVDNMSNNV GCVNGRIESK CGSVSGGDVD GGGQKVKGGM  1860
GDPPSMSVSA GMGTIPVGLE GLAYPFFGQR VEDQMALHQF IRQLQLCNPN GFPQNIPPML  1920
HPLLQQQGLG VFPDPGLQRA GPPNLQQQFA ASMSQKTSQS MGLQLALQGP GVGQQSGAVD  1980
LHQQGAHQLL NSQAARSQQQ LLANMMQQQA AAQLQQQQHP CSKSVVHSLQ QAVLLQPGQV  2040
AQRQQQQLMS PQVVHHSQAH QAGGQHQQYQ ALLQHQQFQQ TVQHFQQQQD HVQAQALIHQ  2100
HHSSHAPLPP SLVSSSKSIA VMPLPQHLSK IPLAPVLQQG IAVHEERNGA GVTSSRVNEG  2160
SAGSSHCEDA SIQQVESGEL RGSCSNGGPR GQDFSRAEFH QLSGAVQRAP PSQTAVPLRP  2220
SPISATESPQ TRPGDVKLFG QSLLSQPTCS AGLQSAARAA PCATDKVSLQ QSPVHTMTLS  2280
STTGTSVPAA TVSKVYGSET SFGGMSSMSD GRQSIWPSLG NLGSIETRNI ANGMHLQAGP  2340
LWKSKERESK LHNMQESRMF REARDAEPGQ STPTNSYKLQ PLEHSRNIQE HSRSEGFPSL  2400
NNPGFYLNEQ GGGGGFSVSS VEASRPELER RNESSSIGSS GCERGPSTCG RSSRGQMDSF  2460
AMKAAGLLAN GPQVPRTMMN SLMAVADLHQ SRSLLSGIGS PRLEDHQCGN FIRQAANGAA  2520
VDTLKADASV GLAGPLAAPQ AHLSGGDLLQ QCVRDSGMYF TQHYSHLADH PGVSPGAWYA  2580
GTGLMHPSDV QRMLVNPALN PFLLGALSRA PSAAEEHLGS IESRDPDNGG SGLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C7e-159321026194NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D7e-159321026194NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.178760.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024374727.10.0uncharacterized protein LOC112281923 isoform X2
TrEMBLA0A2K1KMG60.0A0A2K1KMG6_PHYPA; Uncharacterized protein
STRINGPP1S143_55V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.12e-33MYB family protein