PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c4_6860V3.4.p

Common Name

PHYPADRAFT_86193

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

BES1

Protein Properties

Length: 358aa MW: 38084.3 Da PI: 8.3935

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c4_6860V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	127.3	1.9e-39	20	114	6	102
DUF822 6 kptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.kgskpleeaeaagssasaspesslqss 97 k ++ E+E++k+RER+RRai++ki+aGLR++G+y+lp raD+n+VlkAL+ eAGwvve+DG+tyr ++ k+ ++ + +p+ssl++s Pp3c4_6860V3.4.p 20 KLSASEKEKTKLRERQRRAITTKIFAGLRKYGGYNLPPRADINDVLKALASEAGWVVEPDGNTYRsQHLKRV---HVLSEQGFSQPSSSLHHS 109 56789************************************************************4444444...444444445566666644 PP DUF822 98 lkssa 102 l+ s+ Pp3c4_6860V3.4.p 110 LRQSN 114 44333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.5E-34	23	118	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MPKEAPSESN SKSGTSSMAK LSASEKEKTK LRERQRRAIT TKIFAGLRKY GGYNLPPRAD 60 INDVLKALAS EAGWVVEPDG NTYRSQHLKR VHVLSEQGFS QPSSSLHHSL RQSNPAMNRL 120 QQLIQPPTTI NAGFNCTLAG LMGDAGELRE GNCSTTASPS HHSMGGAAGH HSNSSSMTLM 180 GSGCISNSPF ASPASSEGGA PSQRLSQGNP YFTGLSNGFL PSCGQVLSDC HDGDSSGIKE 240 EYAAAATYFS ADTLDARDFQ MQRATLDVAP HLLNCRDFSG RGFLNHTTTS MNNSMFFNTA 300 AAAAAQPAPN RFSSSRAADP HLSSLMMLSA GHPLFLQEQR ASNQNTPLGS PRLQDPH*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MPKEAPSESN SKSGTSSMAK LSASEKEKTK LRERQRRAIT TKIFAGLRKY GGYNLPPRAD  60
INDVLKALAS EAGWVVEPDG NTYRSQHLKR VHVLSEQGFS QPSSSLHHSL RQSNPAMNRL  120
QQLIQPPTTI NAGFNCTLAG LMGDAGELRE GNCSTTASPS HHSMGGAAGH HSNSSSMTLM  180
GSGCISNSPF ASPASSEGGA PSQRLSQGNP YFTGLSNGFL PSCGQVLSDC HDGDSSGIKE  240
EYAAAATYFS ADTLDARDFQ MQRATLDVAP HLLNCRDFSG RGFLNHTTTS MNNSMFFNTA  300
AAAAAQPAPN RFSSSRAADP HLSSLMMLSA GHPLFLQEQR ASNQNTPLGS PRLQDPH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024373851.1	0.0	BES1/BZR1 homolog protein 4-like isoform X1
Refseq	XP_024373852.1	0.0	BES1/BZR1 homolog protein 4-like isoform X1
TrEMBL	A9SZS1	0.0	A9SZS1_PHYPA; Predicted protein
STRING	PP1S143_29V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	7e-22	beta-amylase 7

Link Out ? help Back to Top
Phytozome	Pp3c4_6860V3.4.p
Entrez Gene	5935123

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]