PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c4_5300V3.5.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HD-ZIP

Protein Properties

Length: 867aa MW: 94232.4 Da PI: 6.5725

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c4_5300V3.5.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.4	4.5e-17	6	64	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r +L k+ +++ +q+kvWFqNrR +ek+ Pp3c4_5300V3.5.p 6 KYVRYTNEQVEALERVYHECPKPSSVRRHQLIKESpilaNIEPKQIKVWFQNRRCREKQ 64 5678****************************9999*****************97 PP
2	START	146	3.5e-46	193	397	3	202
HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS START 3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 aee+++e+++ka+ ++ W +++ +++g++ + +++ s+++ g a+ra+g+v ++ v e+l+d++ W ++++++e+l ++s++ g+++l Pp3c4_5300V3.5.p 193 AEETLTEFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCVGIAARACGLVALDAS-KVTEVLKDRPAWLQDCRRMEVLGALSTAngGTIEL 284 78999**************************************************.8888888888*************999* PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllr 182 +++++a+++l+p Rd+ ++Ry+ l++g +vi+++S++ q + +s+vR+e++ Sg+li+p+++g++ +++v+h d + + ++++lr Pp3c4_5300V3.5.p 285 LYTQMYAPTTLAPaRDYCTLRYTTILEDGNLVICERSLTGGQGGHTmppVQSFVRGEMYSSGYLIRPCEGGGCIIHVVDHYDKEPWRVPEVLR 377 ***********************************988766555589************************************** PP HHHHHHHHHHHHHHHHHTXX CS START 183 slvksglaegaktwvatlqr 202 +l++s ++ ++k + +l++ Pp3c4_5300V3.5.p 378 PLYESPAVLAQKSTIGALRH 397 *********998888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.435	1	65	IPR001356	Homeobox domain
SMART	SM00389	1.4E-13	3	69	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-16	5	68	IPR009057	Homeodomain-like
CDD	cd00086	2.84E-15	6	66	No hit	No description
Pfam	PF00046	1.3E-14	7	64	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.5E-18	8	64	IPR009057	Homeodomain-like
CDD	cd14686	0.00102	58	94	No hit	No description
PROSITE profile	PS50848	21.688	182	382	IPR002913	START domain
CDD	cd08875	4.68E-77	186	402	No hit	No description
SMART	SM00234	2.5E-35	191	401	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	2.2E-20	192	396	IPR023393	START-like domain
Pfam	PF01852	1.2E-43	193	398	IPR002913	START domain
SuperFamily	SSF55961	3.3E-35	193	402	No hit	No description
Pfam	PF08670	9.4E-45	723	863	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 867 aa Download sequence Send to blast
MDASGKYVRY TNEQVEALER VYHECPKPSS VRRHQLIKES PILANIEPKQ IKVWFQNRRC 60 REKQRKEATR LVSVNAKLTA LNKLLMEENE RLAKHTSQLT LENHALRQQI PNLPFPDGRH 120 RLPSHSPLKI EGAVNGGDES STQGGICVKL PGQAGVASTD TSCDSAVTGG LPHRVTPQHS 180 PRDTSPAGLL ATAEETLTEF LAKATGTAVD WIQLPGMKPG PDAIGIIAIS HGCVGIAARA 240 CGLVALDASK VTEVLKDRPA WLQDCRRMEV LGALSTANGG TIELLYTQMY APTTLAPARD 300 YCTLRYTTIL EDGNLVICER SLTGGQGGHT MPPVQSFVRG EMYSSGYLIR PCEGGGCIIH 360 VVDHYDKEPW RVPEVLRPLY ESPAVLAQKS TIGALRHLRR LAAEESGEGV PRNGHHPAVL 420 RILGQRLTKG FNDAVNGFGD DGWETTVTDG LDDVSVMVNA TPKSMEGQIA SDKLLYSLGG 480 GILCAKASML LQNVPPSLLI RFLREHRSEW ADYDMDDMAS FRSNGNGYVP RGGGVSHVQL 540 PLPLAQSGEC GEILEVVKLE GHSSVQHMVL SRDIFLLQLC SGIDESALGA CSQLIFAPVD 600 VALADGIPLL PSGFCVSPID TNVVDGFGLD RTLDLASTLE GGNDLRLNGD VKSNSSSGQM 660 RSVLTIAFQF AYEVHTRETV AAMARQYVRT VVASVQRVAM ALAPSRGAAP PRQAPSNPDA 720 LSLACHVLSS YRFHLGIDLV RPENGSDEAL FKAFWHHTDA IVCCAWKGMP EFVFANRSGL 780 EMFETATSSL QNLNWEKTLN ENDRKLSYAT FTQVLQQGYC SLPAGVRMSS TGRTVTYEQA 840 LAWKVLDDTK AVECIAFLFI NWSLVT*

Sequence ? help Back to Top

Protein Sequence Length: 867 aa Download sequence Send to blast

MDASGKYVRY TNEQVEALER VYHECPKPSS VRRHQLIKES PILANIEPKQ IKVWFQNRRC  60
REKQRKEATR LVSVNAKLTA LNKLLMEENE RLAKHTSQLT LENHALRQQI PNLPFPDGRH  120
RLPSHSPLKI EGAVNGGDES STQGGICVKL PGQAGVASTD TSCDSAVTGG LPHRVTPQHS  180
PRDTSPAGLL ATAEETLTEF LAKATGTAVD WIQLPGMKPG PDAIGIIAIS HGCVGIAARA  240
CGLVALDASK VTEVLKDRPA WLQDCRRMEV LGALSTANGG TIELLYTQMY APTTLAPARD  300
YCTLRYTTIL EDGNLVICER SLTGGQGGHT MPPVQSFVRG EMYSSGYLIR PCEGGGCIIH  360
VVDHYDKEPW RVPEVLRPLY ESPAVLAQKS TIGALRHLRR LAAEESGEGV PRNGHHPAVL  420
RILGQRLTKG FNDAVNGFGD DGWETTVTDG LDDVSVMVNA TPKSMEGQIA SDKLLYSLGG  480
GILCAKASML LQNVPPSLLI RFLREHRSEW ADYDMDDMAS FRSNGNGYVP RGGGVSHVQL  540
PLPLAQSGEC GEILEVVKLE GHSSVQHMVL SRDIFLLQLC SGIDESALGA CSQLIFAPVD  600
VALADGIPLL PSGFCVSPID TNVVDGFGLD RTLDLASTLE GGNDLRLNGD VKSNSSSGQM  660
RSVLTIAFQF AYEVHTRETV AAMARQYVRT VVASVQRVAM ALAPSRGAAP PRQAPSNPDA  720
LSLACHVLSS YRFHLGIDLV RPENGSDEAL FKAFWHHTDA IVCCAWKGMP EFVFANRSGL  780
EMFETATSSL QNLNWEKTLN ENDRKLSYAT FTQVLQQGYC SLPAGVRMSS TGRTVTYEQA  840
LAWKVLDDTK AVECIAFLFI NWSLVT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.11823	0.0	gametophore\| protonema

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269\|PubMed:17999151}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ657204	0.0	DQ657204.1 Physcomitrella patens class III HD-Zip protein HB14 mRNA, complete cds.
GenBank	KU530548	0.0	KU530548.1 Physcomitrella patens C3HDZ3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024373354.1	0.0	homeobox-leucine zipper protein HOX32-like isoform X1
Refseq	XP_024373355.1	0.0	homeobox-leucine zipper protein HOX32-like isoform X1
Refseq	XP_024373356.1	0.0	homeobox-leucine zipper protein HOX32-like isoform X1
Refseq	XP_024373357.1	0.0	homeobox-leucine zipper protein HOX32-like isoform X2
Swissprot	Q6AST1	0.0	HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBL	A0A0Y0JIR4	0.0	A0A0Y0JIR4_PHYPA; C3HDZ3
STRING	PP1S188_95V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32880.1	0.0	homeobox gene 8

Link Out ? help Back to Top
Phytozome	Pp3c4_5300V3.5.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Itoh J,Hibara K,Sato Y,Nagato Y Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice. Plant Physiol., 2008. 147(4): p. 1960-75 [PMID:18567825] Li YY, et al. Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice. Rice (N Y), 2016. 9(1): p. 46 [PMID:27624698]