PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_5300V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 876aa MW: 95367.6 Da PI: 6.5064 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.3 | 4.5e-17 | 15 | 73 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r +L k+ +++ +q+kvWFqNrR +ek+ Pp3c4_5300V3.4.p 15 KYVRYTNEQVEALERVYHECPKPSSVRRHQLIKESpilaNIEPKQIKVWFQNRRCREKQ 73 5678******************************9999*******************97 PP | |||||||
2 | START | 146 | 3.5e-46 | 202 | 406 | 3 | 202 |
HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS START 3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 aee+++e+++ka+ ++ W +++ +++g++ + +++ s+++ g a+ra+g+v ++ v e+l+d++ W ++++++e+l ++s++ g+++l Pp3c4_5300V3.4.p 202 AEETLTEFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCVGIAARACGLVALDAS-KVTEVLKDRPAWLQDCRRMEVLGALSTAngGTIEL 293 78999****************************************************.8888888888*****************999***** PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllr 182 +++++a+++l+p Rd+ ++Ry+ l++g +vi+++S++ q + +s+vR+e++ Sg+li+p+++g++ +++v+h d + + ++++lr Pp3c4_5300V3.4.p 294 LYTQMYAPTTLAPaRDYCTLRYTTILEDGNLVICERSLTGGQGGHTmppVQSFVRGEMYSSGYLIRPCEGGGCIIHVVDHYDKEPWRVPEVLR 386 ***************************************988766555589****************************************** PP HHHHHHHHHHHHHHHHHTXX CS START 183 slvksglaegaktwvatlqr 202 +l++s ++ ++k + +l++ Pp3c4_5300V3.4.p 387 PLYESPAVLAQKSTIGALRH 406 ***********998888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.435 | 10 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-13 | 12 | 78 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-16 | 12 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.88E-15 | 15 | 75 | No hit | No description |
Pfam | PF00046 | 1.4E-14 | 16 | 73 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-18 | 17 | 73 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 0.00103 | 67 | 103 | No hit | No description |
PROSITE profile | PS50848 | 21.688 | 191 | 391 | IPR002913 | START domain |
CDD | cd08875 | 5.89E-77 | 195 | 411 | No hit | No description |
SMART | SM00234 | 2.5E-35 | 200 | 410 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.2E-20 | 201 | 405 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.3E-35 | 202 | 411 | No hit | No description |
Pfam | PF01852 | 1.2E-43 | 202 | 407 | IPR002913 | START domain |
Pfam | PF08670 | 9.5E-45 | 732 | 872 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 876 aa Download sequence Send to blast |
MTETWKEQTM DASGKYVRYT NEQVEALERV YHECPKPSSV RRHQLIKESP ILANIEPKQI 60 KVWFQNRRCR EKQRKEATRL VSVNAKLTAL NKLLMEENER LAKHTSQLTL ENHALRQQIP 120 NLPFPDGRHR LPSHSPLKIE GAVNGGDESS TQGGICVKLP GQAGVASTDT SCDSAVTGGL 180 PHRVTPQHSP RDTSPAGLLA TAEETLTEFL AKATGTAVDW IQLPGMKPGP DAIGIIAISH 240 GCVGIAARAC GLVALDASKV TEVLKDRPAW LQDCRRMEVL GALSTANGGT IELLYTQMYA 300 PTTLAPARDY CTLRYTTILE DGNLVICERS LTGGQGGHTM PPVQSFVRGE MYSSGYLIRP 360 CEGGGCIIHV VDHYDKEPWR VPEVLRPLYE SPAVLAQKST IGALRHLRRL AAEESGEGVP 420 RNGHHPAVLR ILGQRLTKGF NDAVNGFGDD GWETTVTDGL DDVSVMVNAT PKSMEGQIAS 480 DKLLYSLGGG ILCAKASMLL QNVPPSLLIR FLREHRSEWA DYDMDDMASF RSNGNGYVPR 540 GGGVSHVQLP LPLAQSGECG EILEVVKLEG HSSVQHMVLS RDIFLLQLCS GIDESALGAC 600 SQLIFAPVDV ALADGIPLLP SGFCVSPIDT NVVDGFGLDR TLDLASTLEG GNDLRLNGDV 660 KSNSSSGQMR SVLTIAFQFA YEVHTRETVA AMARQYVRTV VASVQRVAMA LAPSRGAAPP 720 RQAPSNPDAL SLACHVLSSY RFHLGIDLVR PENGSDEALF KAFWHHTDAI VCCAWKGMPE 780 FVFANRSGLE MFETATSSLQ NLNWEKTLNE NDRKLSYATF TQVLQQGYCS LPAGVRMSST 840 GRTVTYEQAL AWKVLDDTKA VECIAFLFIN WSLVT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.11823 | 0.0 | gametophore| protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ657204 | 0.0 | DQ657204.1 Physcomitrella patens class III HD-Zip protein HB14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024373354.1 | 0.0 | homeobox-leucine zipper protein HOX32-like isoform X1 | ||||
Refseq | XP_024373355.1 | 0.0 | homeobox-leucine zipper protein HOX32-like isoform X1 | ||||
Refseq | XP_024373356.1 | 0.0 | homeobox-leucine zipper protein HOX32-like isoform X1 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | Q0Q427 | 0.0 | Q0Q427_PHYPA; Class III HD-Zip protein HB14 | ||||
STRING | PP1S188_95V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 0.0 | homeobox gene 8 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_5300V3.4.p |
Publications ? help Back to Top | |||
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