PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_5300V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 876aa    MW: 95367.6 Da    PI: 6.5064
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_5300V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.34.5e-171573357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le++++++++ps  +r +L k+     +++ +q+kvWFqNrR +ek+
  Pp3c4_5300V3.3.p 15 KYVRYTNEQVEALERVYHECPKPSSVRRHQLIKESpilaNIEPKQIKVWFQNRRCREKQ 73
                      5678******************************9999*******************97 PP
2START1463.5e-462024063202
                       HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
             START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                       aee+++e+++ka+ ++  W +++ +++g++ + +++ s+++ g a+ra+g+v  ++   v e+l+d++ W ++++++e+l ++s++  g+++l
  Pp3c4_5300V3.3.p 202 AEETLTEFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCVGIAARACGLVALDAS-KVTEVLKDRPAWLQDCRRMEVLGALSTAngGTIEL 293
                       78999****************************************************.8888888888*****************999***** PP

                       EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHH CS
             START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllr 182
                        +++++a+++l+p Rd+ ++Ry+  l++g +vi+++S++  q   +    +s+vR+e++ Sg+li+p+++g++ +++v+h d + + ++++lr
  Pp3c4_5300V3.3.p 294 LYTQMYAPTTLAPaRDYCTLRYTTILEDGNLVICERSLTGGQGGHTmppVQSFVRGEMYSSGYLIRPCEGGGCIIHVVDHYDKEPWRVPEVLR 386
                       ***************************************988766555589****************************************** PP

                       HHHHHHHHHHHHHHHHHTXX CS
             START 183 slvksglaegaktwvatlqr 202
                       +l++s ++ ++k +  +l++
  Pp3c4_5300V3.3.p 387 PLYESPAVLAQKSTIGALRH 406
                       ***********998888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4351074IPR001356Homeobox domain
SMARTSM003891.4E-131278IPR001356Homeobox domain
SuperFamilySSF466894.71E-161277IPR009057Homeodomain-like
CDDcd000862.88E-151575No hitNo description
PfamPF000461.4E-141673IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.6E-181773IPR009057Homeodomain-like
CDDcd146860.0010367103No hitNo description
PROSITE profilePS5084821.688191391IPR002913START domain
CDDcd088755.89E-77195411No hitNo description
SMARTSM002342.5E-35200410IPR002913START domain
Gene3DG3DSA:3.30.530.202.2E-20201405IPR023393START-like domain
SuperFamilySSF559613.3E-35202411No hitNo description
PfamPF018521.2E-43202407IPR002913START domain
PfamPF086709.5E-45732872IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MTETWKEQTM DASGKYVRYT NEQVEALERV YHECPKPSSV RRHQLIKESP ILANIEPKQI  60
KVWFQNRRCR EKQRKEATRL VSVNAKLTAL NKLLMEENER LAKHTSQLTL ENHALRQQIP  120
NLPFPDGRHR LPSHSPLKIE GAVNGGDESS TQGGICVKLP GQAGVASTDT SCDSAVTGGL  180
PHRVTPQHSP RDTSPAGLLA TAEETLTEFL AKATGTAVDW IQLPGMKPGP DAIGIIAISH  240
GCVGIAARAC GLVALDASKV TEVLKDRPAW LQDCRRMEVL GALSTANGGT IELLYTQMYA  300
PTTLAPARDY CTLRYTTILE DGNLVICERS LTGGQGGHTM PPVQSFVRGE MYSSGYLIRP  360
CEGGGCIIHV VDHYDKEPWR VPEVLRPLYE SPAVLAQKST IGALRHLRRL AAEESGEGVP  420
RNGHHPAVLR ILGQRLTKGF NDAVNGFGDD GWETTVTDGL DDVSVMVNAT PKSMEGQIAS  480
DKLLYSLGGG ILCAKASMLL QNVPPSLLIR FLREHRSEWA DYDMDDMASF RSNGNGYVPR  540
GGGVSHVQLP LPLAQSGECG EILEVVKLEG HSSVQHMVLS RDIFLLQLCS GIDESALGAC  600
SQLIFAPVDV ALADGIPLLP SGFCVSPIDT NVVDGFGLDR TLDLASTLEG GNDLRLNGDV  660
KSNSSSGQMR SVLTIAFQFA YEVHTRETVA AMARQYVRTV VASVQRVAMA LAPSRGAAPP  720
RQAPSNPDAL SLACHVLSSY RFHLGIDLVR PENGSDEALF KAFWHHTDAI VCCAWKGMPE  780
FVFANRSGLE MFETATSSLQ NLNWEKTLNE NDRKLSYATF TQVLQQGYCS LPAGVRMSST  840
GRTVTYEQAL AWKVLDDTKA VECIAFLFIN WSLVT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.118230.0gametophore| protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6572040.0DQ657204.1 Physcomitrella patens class III HD-Zip protein HB14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373354.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024373355.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024373356.10.0homeobox-leucine zipper protein HOX32-like isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLQ0Q4270.0Q0Q427_PHYPA; Class III HD-Zip protein HB14
STRINGPP1S188_95V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Prigge MJ,Clark SE
    Evolution of the class III HD-Zip gene family in land plants.
    Evol. Dev., 2006 Jul-Aug. 8(4): p. 350-61
    [PMID:16805899]
  3. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]