PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_5270V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family CAMTA
Protein Properties Length: 1187aa    MW: 131768 Da    PI: 6.6174
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_5270V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1173.62.8e-54241404117
              CG-1   4 e.kkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                       e ++rwl++ e+++iL+n++++ ++l   ++ rp sgs++L++rk +ryfrkDG++w+kkkdgktvrE+he+LK+g+v++l+cyYah+e+np 
  Pp3c4_5270V3.4.p  24 EaQTRWLRPLEVCEILQNYANYGFKLnpVPPVRPISGSMFLFDRKTLRYFRKDGHNWRKKKDGKTVREAHERLKIGSVDMLHCYYAHGEDNPC 116
                       4499*****************9998866899************************************************************** PP

              CG-1  94 fqrrcywlLeeelekivlvhylev 117
                       fqrrcyw+L  +le+ivlvhy+ev
  Pp3c4_5270V3.4.p 117 FQRRCYWMLTPTLEHIVLVHYREV 140
                       **********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.45118146IPR005559CG-1 DNA-binding domain
SMARTSM010769.9E-7221141IPR005559CG-1 DNA-binding domain
PfamPF038597.9E-5124139IPR005559CG-1 DNA-binding domain
PfamPF018331.9E-6584668IPR002909IPT domain
Gene3DG3DSA:2.60.40.101.7E-6584670IPR013783Immunoglobulin-like fold
SuperFamilySSF812969.33E-18584671IPR014756Immunoglobulin E-set
SuperFamilySSF484033.26E-17772878IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.935772877IPR020683Ankyrin repeat-containing domain
CDDcd002046.36E-15772871No hitNo description
Gene3DG3DSA:1.25.40.202.5E-17774879IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.167816848IPR002110Ankyrin repeat
SMARTSM002489.9E-5816845IPR002110Ankyrin repeat
PfamPF000237.0E-6817847IPR002110Ankyrin repeat
SMARTSM0001596938960IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.108939967IPR000048IQ motif, EF-hand binding site
SMARTSM00015249821004IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.8889831012IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.54E-59841052IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.80310021031IPR000048IQ motif, EF-hand binding site
SMARTSM000150.1110241046IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.35910261049IPR000048IQ motif, EF-hand binding site
PfamPF006120.002310271046IPR000048IQ motif, EF-hand binding site
SMARTSM000154610991121IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.47411001129IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1187 aa     Download sequence    Send to blast
MATTSRLHSG SQPPEIDIRQ IISEAQTRWL RPLEVCEILQ NYANYGFKLN PVPPVRPISG  60
SMFLFDRKTL RYFRKDGHNW RKKKDGKTVR EAHERLKIGS VDMLHCYYAH GEDNPCFQRR  120
CYWMLTPTLE HIVLVHYREV TEGGRFSMSD SQHSVPAVHA ASPPEVTHPV TSPDSLQEDG  180
DLFEPEDVED FKGGLQSTLL DQISPGAQGD TDLLRTSHLN VWPGSELRAE YPPNWYGSSS  240
GGGGDSTLAR LSGLLDSPTE LTPKPGEYPP QLSNLQQFES NELSSRNAQM YVQQELFSSN  300
NHYSGGNSVP ANYSESLGKP SNMYGSEDFG SVQRQENIAA AMVSAGWGQE PESVPSSNAG  360
FSQGAPSVSQ SGAALDASQR TGMSQPPPPV YVKQESMSSW AATLTQVTTP GTHQKLMESL  420
MSSNRMDVSD SLGVQDIRFQ QTPPPKDILE AFDPRGLSRE PQAQVEASLN NVAEGKAGKE  480
AFSLYQKRVL STRSDSLPIE LILDSIASQE KASNNEDLRK QESFGRCFSY LSDFSNLLSP  540
STFPLGWSST PTVGDQRAGI DFFNVSRQED TGTGTSITSD LRFTITDFSP EWAYASEGVK  600
VLVTGVFLGS YTNARNFKWC CMFGDIEVPA EVIGTGVLRC KAPSLPAGKV SLYVTCGDRQ  660
AHSEIRCFEY RSGVGRIFPD TKAELQITDE RLLKVRLSRL LLSDSDSHAG EIIDFSGNLD  720
SISLLHGDDD WLELENLAKT SDLSQDSSFL ERLLQTLLKV RMQKWLFCKV QEEGKGVSVL  780
DAHGLGVVHM AAALGYDWVI TPMVTAGVPI NFRDAQGWTA LHWAAFFGKE QVVIALLGHG  840
ADPGAVTDPT PKCPAGQTPA DLASMKGHAG IGGFLAEWSL TRRLSHMTLS ENLDDLAMSN  900
VAAEAAVAKL SRRESVKLSI SGADDPVSVH ESLQAVRNAA RAAALIQAAF RQYSFRKREE  960
DDLASIRLDE YGMTESQMQA LLTARAAQRI QRAYRGHQEK KQQLAASRIQ QKFRSWKVRR  1020
DYLKFRQRVV RIQAQVRGNL VRKRFKKLLW SVGVLEKLVL RWKRKRLGLR GFKSGDYDVD  1080
GKEDDEEFLK EGRKQAIVAL EKSVTTVQTM VRSNEARAQY RRLREGSLRS ELLGQFLSVS  1140
PRGSFTSANT QYEYSHLQQT YVEQNGDSQM QQIYLETSDQ LMNFGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cxk_A3e-13585673991calmodulin binding transcription activator 1
2cxk_B3e-13585673991calmodulin binding transcription activator 1
2cxk_C3e-13585673991calmodulin binding transcription activator 1
2cxk_D3e-13585673991calmodulin binding transcription activator 1
2cxk_E3e-13585673991calmodulin binding transcription activator 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.172370.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024374672.10.0calmodulin-binding transcription activator 3-like
RefseqXP_024374673.10.0calmodulin-binding transcription activator 3-like
RefseqXP_024374674.10.0calmodulin-binding transcription activator 3-like
TrEMBLA0A2K1KMA20.0A0A2K1KMA2_PHYPA; Uncharacterized protein
STRINGPP1S188_92V6.20.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.21e-92signal responsive 1