PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c4_4040V3.1.p

Common Name

PHYPADRAFT_95064

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 417aa MW: 45518.4 Da PI: 7.2626

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c4_4040V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.1	1.8e-09	308	350	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + r RR+ri +++ L++l+P +K++ a++L +A++YIk L Pp3c4_4040V3.1.p 308 VAARHRRERISDRIRVLQRLVPGG-----TKMDTASMLDEAIHYIKFL 350 56799***************87.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.161	301	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.29E-12	305	355	No hit	No description
SuperFamily	SSF47459	9.55E-15	306	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.8E-15	307	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-14	307	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.3E-7	309	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MLETSIGRLL NCSYSHGALL LQSMSPQLMG SAEQQALVQS FVRLNSGCML EHSSQQGNGN 60 PNTFFKSTNS SSLVNSTSEM TSPDVDYVGA LENNLHMNCI SSLGGGNNVL IPGLTSMLDR 120 NKNRDGTFMA AHRYYKSFYP MESPGGPLSS GLLPCGKSEN SLNKGEARVI AIADLQRLLE 180 GDDEDWMVQE EIKMHESSKL VKPQQQSEKH AVFQDSFGGC IEASSSAGFT VTCFDRVTIP 240 SATHPPTPPF RQRKGSVGGS PAVDLDNFAR MQAILFRQAS QLIPTLEDIA SSRPKRRNVR 300 ISIDTQSVAA RHRRERISDR IRVLQRLVPG GTKMDTASML DEAIHYIKFL KQQLQTLEQL 360 GIDGCDPGDV ALRGGEALQL SSSVRPAFHM NYTSAFQSWP ASVTDLGNRS KTCPQD*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MLETSIGRLL NCSYSHGALL LQSMSPQLMG SAEQQALVQS FVRLNSGCML EHSSQQGNGN  60
PNTFFKSTNS SSLVNSTSEM TSPDVDYVGA LENNLHMNCI SSLGGGNNVL IPGLTSMLDR  120
NKNRDGTFMA AHRYYKSFYP MESPGGPLSS GLLPCGKSEN SLNKGEARVI AIADLQRLLE  180
GDDEDWMVQE EIKMHESSKL VKPQQQSEKH AVFQDSFGGC IEASSSAGFT VTCFDRVTIP  240
SATHPPTPPF RQRKGSVGGS PAVDLDNFAR MQAILFRQAS QLIPTLEDIA SSRPKRRNVR  300
ISIDTQSVAA RHRRERISDR IRVLQRLVPG GTKMDTASML DEAIHYIKFL KQQLQTLEQL  360
GIDGCDPGDV ALRGGEALQL SSSVRPAFHM NYTSAFQSWP ASVTDLGNRS KTCPQD*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024373228.1	0.0	transcription factor bHLH110-like
TrEMBL	A0A2K1KM45	0.0	A0A2K1KM45_PHYPA; Uncharacterized protein
STRING	PP1S273_20V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP761	15	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50330.1	4e-25	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c4_4040V3.1.p
Entrez Gene	5943366

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]