PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_3820V3.1.p
Common NamePHYPADRAFT_235348, PPMA12
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family M-type_MADS
Protein Properties Length: 424aa    MW: 47293.8 Da    PI: 9.4519
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_3820V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF831.8e-26959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+ien++nrqvt+skRrng++KK +ELSvLCd++ a+i+fs++gkl  y++
  Pp3c4_3820V3.1.p  9 KKIENSTNRQVTYSKRRNGLIKKTYELSVLCDIDLALIMFSPSGKLTQYCN 59
                      68***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.777161IPR002100Transcription factor, MADS-box
SMARTSM004328.2E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-30286IPR002100Transcription factor, MADS-box
CDDcd002651.54E-37274No hitNo description
PRINTSPR004042.5E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.483139239IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MGRVKLEIKK IENSTNRQVT YSKRRNGLIK KTYELSVLCD IDLALIMFSP SGKLTQYCNS  60
SIEEVIGRFA NLTAHERNKS FEDMLARISN SQMNHDPSKY TRKIENLEYL HKALKKLAGE  120
NLSTKQQPLV GRKSNESETL VLRQELKKAQ EAKELVQQRA RLYLADEQLL QNVTSVQQLA  180
NMETELEQAL ERVRSRKNYV SSAYQTTHAL QRQQHEFLGN SLQMMALRQQ QQQQAGLAGN  240
QLYLQWTMQS DRPGSTQDFF RQQTNPTASL VPATLASQEP GSNGESDPAS AAYFPAGPQA  300
GALESLRRLG MATTSRGLPL HGTSVEQPNG HYNESQQKKA KVEASTDFAT STSAAGEATT  360
EGTSETPFTR KHQQPEQAHG SAGGADWSSH PAKHHLNAFT NGNMFADFTQ HGYQPGWKKL  420
HEM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-17185185MEF2 CHIMERA
6byy_B6e-17185185MEF2 CHIMERA
6byy_C6e-17185185MEF2 CHIMERA
6byy_D6e-17185185MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3344691e-129GQ334469.1 Funaria hygrometrica MIKC* MADS-box transcription factor (MADS10) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024374484.10.0agamous-like MADS-box protein AGL66 isoform X1
TrEMBLA0A2K1KM380.0A0A2K1KM38_PHYPA; Uncharacterized protein
STRINGPP1S273_51V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.11e-35AGAMOUS-like 66
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]