PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c4_350V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

GRAS

Protein Properties

Length: 52aa MW: 5975.99 Da PI: 9.7536

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c4_350V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	40.5	4.2e-13	5	50	227	273
GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 +++l+++ls+k++++ q+++h ++ F+++f+eal+yy+alfdsle+ Pp3c4_350V3.1.p 5 TIRLIQKLSSKIITIRKQNLNH-KGLFFDKFVEALHYYAALFDSLEK 50 789*****************.88999***************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	10.325	1	51	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-10	5	50	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 52 aa Download sequence Send to blast
CDFATIRLIQ KLSSKIITIR KQNLNHKGLF FDKFVEALHY YAALFDSLEK S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K1KLN6	1e-28	A0A2K1KLN6_PHYPA; Uncharacterized protein (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	1e-14	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pp3c4_350V3.1.p