PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_31920V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 402aa MW: 44125.7 Da PI: 5.0262 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 226 | 277 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ rg+++AeIrdp ++g +r +lg+f+taeeAa a+++a+ +++g Pp3c4_31920V3.2.p 226 PHFRGVRQRP-RGKFAAEIRDPAKQG--ARLWLGTFDTAEEAAIAYDRAAVRMRG 277 689*******.8*********96654..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.0E-12 | 226 | 277 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.32E-29 | 226 | 285 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.3E-30 | 227 | 286 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.84 | 227 | 285 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.8E-36 | 227 | 291 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-21 | 227 | 286 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.5E-8 | 228 | 239 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-8 | 251 | 267 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MEQADTPRTR IKQVLDSFNE YLFQEHDDEA LFCTLDDIAT TNSFGKGSEF GCSEGLSPSS 60 SLNFSSCMNF SSPSESSDGS ASKDDFASCQ YSSRSTAELA DEAQPEVRGS VESEGNACRI 120 ENVSWRIKDC EASSLAANSD ECDSDLRQDA PVLGGRDTPM NEETVREGES CEQRAVSSVF 180 REDTEAALLE VWEDVCDVGF SSIQTIGSLE ASTSQMQQSP KVWRAPHFRG VRQRPRGKFA 240 AEIRDPAKQG ARLWLGTFDT AEEAAIAYDR AAVRMRGSRA LLNFPLRAAT ALSNPESFPP 300 APRTSITSRG SRFRSTPPAA ILSPEKSPSS SPHNRDQGQQ PPPQQLGSIL GLRQFMHTTK 360 VDTRSYIAKQ IQISSKRSRE CQIITEPRHR SKLLRVSDFG V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-30 | 227 | 287 | 2 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024373017.1 | 0.0 | AP2-like ethylene-responsive transcription factor BBM2 | ||||
TrEMBL | A0A2K1KQR2 | 0.0 | A0A2K1KQR2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S289_49V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 9e-25 | ethylene responsive element binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_31920V3.2.p |