PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_31920V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 402aa    MW: 44125.7 Da    PI: 5.0262
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_31920V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-18226277155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        ++++GVr+++ rg+++AeIrdp ++g  +r +lg+f+taeeAa a+++a+ +++g
  Pp3c4_31920V3.1.p 226 PHFRGVRQRP-RGKFAAEIRDPAKQG--ARLWLGTFDTAEEAAIAYDRAAVRMRG 277
                        689*******.8*********96654..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-12226277IPR001471AP2/ERF domain
CDDcd000181.32E-29226285No hitNo description
Gene3DG3DSA:3.30.730.103.3E-30227286IPR001471AP2/ERF domain
PROSITE profilePS5103222.84227285IPR001471AP2/ERF domain
SMARTSM003807.8E-36227291IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-21227286IPR016177DNA-binding domain
PRINTSPR003672.5E-8228239IPR001471AP2/ERF domain
PRINTSPR003672.5E-8251267IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEQADTPRTR IKQVLDSFNE YLFQEHDDEA LFCTLDDIAT TNSFGKGSEF GCSEGLSPSS  60
SLNFSSCMNF SSPSESSDGS ASKDDFASCQ YSSRSTAELA DEAQPEVRGS VESEGNACRI  120
ENVSWRIKDC EASSLAANSD ECDSDLRQDA PVLGGRDTPM NEETVREGES CEQRAVSSVF  180
REDTEAALLE VWEDVCDVGF SSIQTIGSLE ASTSQMQQSP KVWRAPHFRG VRQRPRGKFA  240
AEIRDPAKQG ARLWLGTFDT AEEAAIAYDR AAVRMRGSRA LLNFPLRAAT ALSNPESFPP  300
APRTSITSRG SRFRSTPPAA ILSPEKSPSS SPHNRDQGQQ PPPQQLGSIL GLRQFMHTTK  360
VDTRSYIAKQ IQISSKRSRE CQIITEPRHR SKLLRVSDFG V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-30227287262ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373017.10.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2K1KQR20.0A0A2K1KQR2_PHYPA; Uncharacterized protein
STRINGPP1S289_49V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.19e-25ethylene responsive element binding factor 1