PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_29470V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 365aa    MW: 40842.8 Da    PI: 9.2389
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_29470V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.84e-1413575397
                NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97
                       +++++wyfFs++dkky+ g+r+nrat+ g+Wkatg++k+++ +++
  Pp3c4_29470V3.1.p 13 EDQSDWYFFSHKDKKYPCGNRANRATAGGFWKATGRNKPIHLQRN 57
                       45679***********************************98644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.2771118IPR003441NAC domain
SuperFamilySSF1019413.92E-141182IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSGVCRIGDV TTEDQSDWYF FSHKDKKYPC GNRANRATAG GFWKATGRNK PIHLQRNMID  60
GAPGVVPNYG SGGWVVCRVF RKTKNINANS LDTYCSFKEC QQVEIGMLQP EVVSLRKQEI  120
YLDREVGSIS ITSQLHHPFN FTCKLEINVE DDNTTVHNSF KSNLHHLHRP HEAGKDHSPA  180
PSSSTTLWNL PQGSRINAQN GGTYSSVPGF LGCDSSPTDL HDVGSSVRST ADCLLASYQE  240
TKVDVWNYGR NSHNVQSINV YVLNWTSCLK GHIDQHQPHR CYSGETIWPK MIQGDPAAVR  300
RRKPISRHAT KRSHIQITTS SNAAIFALVN RRYPMRCRTS IVAVETAITQ ERIRGTYHSH  360
HNGV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1KQH80.0A0A2K1KQH8_PHYPA; Uncharacterized protein
STRINGPP1S102_187V6.11e-161(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.14e-22NAC 007