PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_27870V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 448aa MW: 49665.6 Da PI: 9.3572 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.3 | 3.9e-18 | 298 | 348 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr++ +gr++AeIrd s r + +lg+f+taeeAa a++ a+++l+g Pp3c4_27870V3.2.p 298 HYRGVRRRT-WGRYAAEIRDSS----RpgSHLWLGTFDTAEEAALAYDDAALRLRG 348 69****877.**********43....356*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.58E-17 | 297 | 356 | No hit | No description |
PROSITE profile | PS51032 | 22.708 | 298 | 356 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-29 | 298 | 357 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-12 | 298 | 348 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 298 | 357 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-33 | 298 | 362 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-9 | 299 | 310 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-9 | 322 | 338 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MFVLVCSSDH VGHVLWFVNA LKGRGIHGES PVNRALAWRG ETEGSLVDFL NLLLRSPSAS 60 EMEETMQMLT SFAEACNNNV QDYEWGLSFK NFFGDSNDEE NSALPRKFHR FGSLSSHGSA 120 SKSESPKCRS TRPLTIALPG HLDKDTKSLI FGDLESMFSR PSSPWSNKRV LCNNLSGPNM 180 CNPLPRGHYD SDSSYNKSDV DDMILVKSIE NGWARLSPNR SAGDVAFPAK NPEKELTSNS 240 QSIAATEEPV YVSESVASST METRRMTCTV PALKTRKNPN SASRCRKTGR PRQANLQHYR 300 GVRRRTWGRY AAEIRDSSRP GSHLWLGTFD TAEEAALAYD DAALRLRGSR ALLNFPLRAA 360 SGLNVQLLTT SRSKVSRKAV AADQVEAQNQ NQTDYPKKVE RRKRSKEIPQ LESDLFDVSK 420 HLRAIATPDV AEDSPRHGTV STPSTWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-26 | 294 | 362 | 1 | 69 | ATERF1 |
3gcc_A | 1e-26 | 294 | 362 | 1 | 69 | ATERF1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024374399.1 | 0.0 | uncharacterized protein LOC112281757 | ||||
TrEMBL | A0A2K1KQ68 | 0.0 | A0A2K1KQ68_PHYPA; Uncharacterized protein | ||||
STRING | PP1S115_154V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 2e-16 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_27870V3.2.p |