PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_27870V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 387aa    MW: 43007 Da    PI: 9.6438
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_27870V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-18237287255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr++  +gr++AeIrd s    r   + +lg+f+taeeAa a++ a+++l+g
  Pp3c4_27870V3.1.p 237 HYRGVRRRT-WGRYAAEIRDSS----RpgSHLWLGTFDTAEEAALAYDDAALRLRG 287
                        69****877.**********43....356*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.80E-18236295No hitNo description
Gene3DG3DSA:3.30.730.103.9E-29237296IPR001471AP2/ERF domain
PROSITE profilePS5103222.708237295IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22237296IPR016177DNA-binding domain
SMARTSM003801.1E-33237301IPR001471AP2/ERF domain
PfamPF008473.2E-12237287IPR001471AP2/ERF domain
PRINTSPR003672.8E-9238249IPR001471AP2/ERF domain
PRINTSPR003672.8E-9261277IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEETMQMLTS FAEACNNNVQ DYEWGLSFKN FFGDSNDEEN SALPRKFHRF GSLSSHGSAS  60
KSESPKCRST RPLTIALPGH LDKDTKSLIF GDLESMFSRP SSPWSNKRVL CNNLSGPNMC  120
NPLPRGHYDS DSSYNKSDVD DMILVKSIEN GWARLSPNRS AGDVAFPAKN PEKELTSNSQ  180
SIAATEEPVY VSESVASSTM ETRRMTCTVP ALKTRKNPNS ASRCRKTGRP RQANLQHYRG  240
VRRRTWGRYA AEIRDSSRPG SHLWLGTFDT AEEAALAYDD AALRLRGSRA LLNFPLRAAS  300
GLNVQLLTTS RSKVSRKAVA ADQVEAQNQN QTDYPKKVER RKRSKEIPQL ESDLFDVSKH  360
LRAIATPDVA EDSPRHGTVS TPSTWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-27233301169ATERF1
3gcc_A6e-27233301169ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024374399.10.0uncharacterized protein LOC112281757
TrEMBLA0A2K1KQ680.0A0A2K1KQ68_PHYPA; Uncharacterized protein
STRINGPP1S115_154V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-16ERF family protein