PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_270V3.6.p | ||||||||
Common Name | PHYPADRAFT_170896 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Trihelix | ||||||||
Protein Properties | Length: 667aa MW: 72778.4 Da PI: 7.8146 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 46.2 | 1.2e-14 | 14 | 97 | 1 | 79 |
trihelix 1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwen.lnkrykkikegekkrtsessstc 79 rWt++e+ +L +a + +e++ + + ++ +We +sk++r++g++rs qC+++w++ l +ykk++++++k+ + +s + Pp3c4_270V3.6.p 14 RWTRSETVVLANALKAREDEAHDVAsksavgTAGDKWENISKFCRSHGVTRSGAQCNSRWSKgLYLDYKKVRDWQRKE--GLESYW 97 8*********99888888887764323456699***************************9779************95..333345 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.4E-7 | 13 | 99 | No hit | No description |
PROSITE profile | PS50090 | 6.806 | 14 | 77 | IPR017877 | Myb-like domain |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 667 aa Download sequence Send to blast |
MEGGGEEEHA VGHRWTRSET VVLANALKAR EDEAHDVASK SAVGTAGDKW ENISKFCRSH 60 GVTRSGAQCN SRWSKGLYLD YKKVRDWQRK EGLESYWKMK EKKRRELKLP GALDEEVFNI 120 LVSFLDPDLK QTGTPESEVD SDRPLHAISS ALVVDKGVAE PQQTGPSVPA PGATPQHSGG 180 SSDGVGSMSD FARLQARATS GESLQSLKYK IGAPPGADQK PSTSGQKRKR SSSASPVGAP 240 ASTDGRLESI DPLNIESVKP IHFNVPPPLD TPRFNELNVA QRSSTLHWDG PPNLASLETR 300 LGAQSEAVWN RVRMLNEQVV EMVDISNQRL LAQMQSLFTQ VRLQLQVISA QMQAHVHEAT 360 RSLQAELQAI LQAHTEQFFN QMQAQYASGG SHSQGQAPPK DRSTQNGNCS GDKTPRQAVP 420 DIQVDFSQLP VPLLEPVQIA RDKERVVRPW TGEPHSPAPR TNRLLPHIFD VQKMESMTAS 480 KSSRLPPHIS DVDRILRQQQ GLPLPSSMPN WNQASFVISE LDRVLGHKPG PLDIHMIPPA 540 PGPSKCTYVV NEFDRSLRQR QIADVKMKAP LSPSSMGLNV ASQGPPVWSQ GPIHGDVLAL 600 LSVSGNPNQS IEQSSGQDVE PNRRHQPASS DTVDGDETEG SGQDVGASSQ KMGANQRGWR 660 SRKTTT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.7559 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024374101.1 | 0.0 | uncharacterized protein LOC112281624 isoform X1 | ||||
Refseq | XP_024374102.1 | 0.0 | uncharacterized protein LOC112281624 isoform X1 | ||||
Refseq | XP_024374103.1 | 0.0 | uncharacterized protein LOC112281624 isoform X1 | ||||
Refseq | XP_024374105.1 | 0.0 | uncharacterized protein LOC112281624 isoform X1 | ||||
TrEMBL | A9TMR2 | 0.0 | A9TMR2_PHYPA; Predicted protein | ||||
STRING | PP1S267_80V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-17 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_270V3.6.p |
Entrez Gene | 5943081 |
Publications ? help Back to Top | |||
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