PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_270V3.5.p
Common NamePHYPADRAFT_170896
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 657aa    MW: 71913.5 Da    PI: 8.091
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_270V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.21.2e-141497179
         trihelix  1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwen.lnkrykkikegekkrtsessstc 79
                     rWt++e+ +L +a + +e++  + +       ++ +We +sk++r++g++rs  qC+++w++ l  +ykk++++++k+  + +s +
  Pp3c4_270V3.5.p 14 RWTRSETVVLANALKAREDEAHDVAsksavgTAGDKWENISKFCRSHGVTRSGAQCNSRWSKgLYLDYKKVRDWQRKE--GLESYW 97
                     8*********99888888887764323456699***************************9779************95..333345 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-71399No hitNo description
PROSITE profilePS500906.8061477IPR017877Myb-like domain
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MEGGGEEEHA VGHRWTRSET VVLANALKAR EDEAHDVASK SAVGTAGDKW ENISKFCRSH  60
GVTRSGAQCN SRWSKGLYLD YKKVRDWQRK EGLESYWKMK EKKRRELKLP GALDEEVFNI  120
LVSFLDPDLK QTGTPESEVD SDRPLHAISS ALVVDKGVAE PQQTGPSVPA PGATPQHSGD  180
FARLQARATS GESLQSLKYK IGAPPGADQK PSTSGQKRKR SSSASPVGAP ASTDGRLESI  240
DPLNIESVKP IHFNVPPPLD TPRFNELNVA QRSSTLHWDG PPNLASLETR LGAQSEAVWN  300
RVRMLNEQVV EMVDISNQRL LAQMQSLFTQ VRLQLQVISA QMQAHVHEAT RSLQAELQAI  360
LQAHTEQFFN QMQAQYASGG SHSQGQAPPK DRSTQNGNCS GDKTPRQAVP DIQVDFSQLP  420
VPLLEPVQIA RDKERVVRPW TGEPHSPAPR TNRLLPHIFD VQKMESMTAS KSSRLPPHIS  480
DVDRILRQQQ GLPLPSSMPN WNQASFVISE LDRVLGHKPG PLDIHMIPPA PGPSKCTYVV  540
NEFDRSLRQR QIADVKMKAP LSPSSMGLNV ASQGPPVWSQ GPIHGDVLAL LSVSGNPNQS  600
IEQSSGQDVE PNRRHQPASS DTVDGDETEG SGQDVGASSQ KMGANQRGWR SRKTTT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.75590.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024374107.10.0uncharacterized protein LOC112281624 isoform X3
TrEMBLA9TMR20.0A9TMR2_PHYPA; Predicted protein
STRINGPP1S267_80V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.19e-18Trihelix family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]