PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_270V3.4.p
Common NamePHYPADRAFT_170896
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 667aa    MW: 72778.4 Da    PI: 7.8146
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_270V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.21.2e-141497179
         trihelix  1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwen.lnkrykkikegekkrtsessstc 79
                     rWt++e+ +L +a + +e++  + +       ++ +We +sk++r++g++rs  qC+++w++ l  +ykk++++++k+  + +s +
  Pp3c4_270V3.4.p 14 RWTRSETVVLANALKAREDEAHDVAsksavgTAGDKWENISKFCRSHGVTRSGAQCNSRWSKgLYLDYKKVRDWQRKE--GLESYW 97
                     8*********99888888887764323456699***************************9779************95..333345 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-71399No hitNo description
PROSITE profilePS500906.8061477IPR017877Myb-like domain
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MEGGGEEEHA VGHRWTRSET VVLANALKAR EDEAHDVASK SAVGTAGDKW ENISKFCRSH  60
GVTRSGAQCN SRWSKGLYLD YKKVRDWQRK EGLESYWKMK EKKRRELKLP GALDEEVFNI  120
LVSFLDPDLK QTGTPESEVD SDRPLHAISS ALVVDKGVAE PQQTGPSVPA PGATPQHSGG  180
SSDGVGSMSD FARLQARATS GESLQSLKYK IGAPPGADQK PSTSGQKRKR SSSASPVGAP  240
ASTDGRLESI DPLNIESVKP IHFNVPPPLD TPRFNELNVA QRSSTLHWDG PPNLASLETR  300
LGAQSEAVWN RVRMLNEQVV EMVDISNQRL LAQMQSLFTQ VRLQLQVISA QMQAHVHEAT  360
RSLQAELQAI LQAHTEQFFN QMQAQYASGG SHSQGQAPPK DRSTQNGNCS GDKTPRQAVP  420
DIQVDFSQLP VPLLEPVQIA RDKERVVRPW TGEPHSPAPR TNRLLPHIFD VQKMESMTAS  480
KSSRLPPHIS DVDRILRQQQ GLPLPSSMPN WNQASFVISE LDRVLGHKPG PLDIHMIPPA  540
PGPSKCTYVV NEFDRSLRQR QIADVKMKAP LSPSSMGLNV ASQGPPVWSQ GPIHGDVLAL  600
LSVSGNPNQS IEQSSGQDVE PNRRHQPASS DTVDGDETEG SGQDVGASSQ KMGANQRGWR  660
SRKTTT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.75590.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024374101.10.0uncharacterized protein LOC112281624 isoform X1
RefseqXP_024374102.10.0uncharacterized protein LOC112281624 isoform X1
RefseqXP_024374103.10.0uncharacterized protein LOC112281624 isoform X1
RefseqXP_024374105.10.0uncharacterized protein LOC112281624 isoform X1
TrEMBLA9TMR20.0A9TMR2_PHYPA; Predicted protein
STRINGPP1S267_80V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-17Trihelix family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]