PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_26880V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | WRKY | ||||||||
Protein Properties | Length: 662aa MW: 72529.9 Da PI: 7.005 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.5 | 1e-31 | 436 | 493 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ++Dgy+WrKYGqK vk+s++prsYYrCt ++Cpv+k+ver+a+d +v++tYeg+Hnh Pp3c4_26880V3.4.p 436 MEDGYKWRKYGQKAVKNSPYPRSYYRCTNPDCPVRKRVERKADDHGLVVTTYEGTHNH 493 58******************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.8E-33 | 421 | 493 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-28 | 428 | 493 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.987 | 431 | 496 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-36 | 436 | 495 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-25 | 437 | 493 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 662 aa Download sequence Send to blast |
MITGAKNKET HDHEQSDALP RRRAQVPLHL HALVATLIYC AGLGESSAVL RVILILNTFL 60 WRRCKAFIQS WKAREVKTAR SITCFVYYSE LATFVEGYHR GYSMSEMARK NASDQRPVAD 120 SSSGIEQLMR SLGEDVNLSN SRNDTTKTTT KLANASSLTV SPPPRDSTIF FASCLGLVNS 180 PPPFDMSLFM PSPTAPWIHA SPVGDTTVQS AQQTSHGLNV NPNTVSNLGL TNNVQSTPFE 240 ALSPSDSTDL LDASPEYPWF PRDSNALMSN YNPLLQHLNL SPVATIPEER GLPSSSYNTG 300 ICIAGYQTLS DPFDLSSLAV SNEDKSPKRG SSPSSTRLND VSPLTSTPNS PFSSEDGYVS 360 DCIADDSAVG VSHNGSIIKR KTPDRALNES EENQFPSEPS PKKQTTNNLK KEKGAKSKRE 420 RKPRYAIQTR SDVDIMEDGY KWRKYGQKAV KNSPYPRSYY RCTNPDCPVR KRVERKADDH 480 GLVVTTYEGT HNHLSHTTAG CLSKSSDTSA TAPFSDQDPG TGVANFSLQP LSRERSEFDL 540 SIQLIGQQGN QACHDFATTG TSASSSLSAT QGMTMLYSLS RNPNMLSEAL KENPLLGNDQ 600 FNNDRLSELQ GTMLGSMAFP DPQLGRAHEI QMILGHDLLP NSYQGLLDDI LRQSNGLHRH 660 L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-27 | 426 | 493 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-27 | 426 | 493 | 7 | 74 | Probable WRKY transcription factor 4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ889616 | 1e-44 | DQ889616.1 Physcomitrella patens clone 2 WKRY transcription factor-like gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024373428.1 | 0.0 | probable WRKY transcription factor 32 isoform X1 | ||||
TrEMBL | A0A2K1KQ26 | 0.0 | A0A2K1KQ26_PHYPA; Uncharacterized protein | ||||
STRING | PP1S115_10V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 5e-35 | WRKY DNA-binding protein 57 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_26880V3.4.p |