PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_26880V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 662aa    MW: 72529.9 Da    PI: 7.005
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_26880V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.51e-31436493158
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                        ++Dgy+WrKYGqK vk+s++prsYYrCt ++Cpv+k+ver+a+d  +v++tYeg+Hnh
  Pp3c4_26880V3.4.p 436 MEDGYKWRKYGQKAVKNSPYPRSYYRCTNPDCPVRKRVERKADDHGLVVTTYEGTHNH 493
                        58******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-33421493IPR003657WRKY domain
SuperFamilySSF1182905.36E-28428493IPR003657WRKY domain
PROSITE profilePS5081129.987431496IPR003657WRKY domain
SMARTSM007741.6E-36436495IPR003657WRKY domain
PfamPF031063.4E-25437493IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MITGAKNKET HDHEQSDALP RRRAQVPLHL HALVATLIYC AGLGESSAVL RVILILNTFL  60
WRRCKAFIQS WKAREVKTAR SITCFVYYSE LATFVEGYHR GYSMSEMARK NASDQRPVAD  120
SSSGIEQLMR SLGEDVNLSN SRNDTTKTTT KLANASSLTV SPPPRDSTIF FASCLGLVNS  180
PPPFDMSLFM PSPTAPWIHA SPVGDTTVQS AQQTSHGLNV NPNTVSNLGL TNNVQSTPFE  240
ALSPSDSTDL LDASPEYPWF PRDSNALMSN YNPLLQHLNL SPVATIPEER GLPSSSYNTG  300
ICIAGYQTLS DPFDLSSLAV SNEDKSPKRG SSPSSTRLND VSPLTSTPNS PFSSEDGYVS  360
DCIADDSAVG VSHNGSIIKR KTPDRALNES EENQFPSEPS PKKQTTNNLK KEKGAKSKRE  420
RKPRYAIQTR SDVDIMEDGY KWRKYGQKAV KNSPYPRSYY RCTNPDCPVR KRVERKADDH  480
GLVVTTYEGT HNHLSHTTAG CLSKSSDTSA TAPFSDQDPG TGVANFSLQP LSRERSEFDL  540
SIQLIGQQGN QACHDFATTG TSASSSLSAT QGMTMLYSLS RNPNMLSEAL KENPLLGNDQ  600
FNNDRLSELQ GTMLGSMAFP DPQLGRAHEI QMILGHDLLP NSYQGLLDDI LRQSNGLHRH  660
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-27426493774Probable WRKY transcription factor 4
2lex_A4e-27426493774Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8896161e-44DQ889616.1 Physcomitrella patens clone 2 WKRY transcription factor-like gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373428.10.0probable WRKY transcription factor 32 isoform X1
TrEMBLA0A2K1KQ260.0A0A2K1KQ26_PHYPA; Uncharacterized protein
STRINGPP1S115_10V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.25e-35WRKY DNA-binding protein 57