PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_2660V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 282aa MW: 31665.7 Da PI: 6.0627 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 9.8e-20 | 42 | 92 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr + +g+Wv+eIr+p +kr r++lg+f tae+Aa+a++ a+ +l+g Pp3c4_2660V3.2.p 42 PKYRGVRMRQ-WGKWVSEIREP---NKRSRIWLGSFPTAEMAARAYDIAMVCLRG 92 79*****998.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.46E-35 | 42 | 102 | No hit | No description |
Pfam | PF00847 | 3.7E-12 | 42 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 43 | 102 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-40 | 43 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-22 | 43 | 102 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.775 | 43 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-10 | 44 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-10 | 66 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MVDRNRTQRG ALSVMTGAPH YLCLVKKHQQ FSLKREENLA SPKYRGVRMR QWGKWVSEIR 60 EPNKRSRIWL GSFPTAEMAA RAYDIAMVCL RGPSAVLNFP DSPPQSVPKC RTPKDIQIAA 120 AAGAAEPCIP VAFPIKEEAQ SLESQLRSIK NETSFSPRSH SRFAESENSG TSGERPRKSA 180 SKSDDTHDED LDCTGESSPP PAATEDEYVS LEEVELAWGG MRFDDINLID LPPLEDFSED 240 CPLLMAKTNP GRRSLPQYCR QFSNKYEHVD NMQYVYDVFT M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-17 | 43 | 100 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.104 | 0.0 | gametophore| protonema| sporophyte |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372503.1 | 0.0 | ethylene-responsive transcription factor ERF043-like | ||||
TrEMBL | A0A2K1KLY9 | 0.0 | A0A2K1KLY9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S480_16V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G21960.1 | 2e-31 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_2660V3.2.p |