PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_2530V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 571aa    MW: 62200.8 Da    PI: 6.6611
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_2530V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19287336255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a++ a+ k++g
  Pp3c4_2530V3.2.p 287 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAMAYDIAATKFRG 336
                       7********.**********94....45***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.159287344IPR001471AP2/ERF domain
PfamPF008477.2E-13287336IPR001471AP2/ERF domain
CDDcd000188.72E-34287345No hitNo description
SuperFamilySSF541713.01E-22287345IPR016177DNA-binding domain
SMARTSM003802.6E-38287350IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-31287345IPR001471AP2/ERF domain
PRINTSPR003672.4E-11288299IPR001471AP2/ERF domain
PRINTSPR003672.4E-11310326IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MVQSEIDTNC DLIATSFNLI KFPQLNATRS GLHHRVVAGW DMICVWNQPE RIDKLEPTDP  60
PDFKLTPPSS FRDLATGQMA GVSTMVSNFP LPLGTSAYSN ALSGFSNAAQ YTNYWGSNNP  120
LNPNPTDEGL GAAITGHKRL RSEKSDPFSS HYAATWNYPS ASLIADHSNI VGSSMSVDLA  180
SRASEEMSWA APLGEVVKKA TERSSPPRCT GSPSNTQDQY SSDSGILHSD YVASLPFSLP  240
HNEDPQMRKS SGLEQLEGGG SHPGERSGQG SEATPTPSPS PPVKKRRYRG VRQRPWGKWA  300
AEIRDPKKAA RVWLGTFDTA EDAAMAYDIA ATKFRGLRAK LNFPDGKIPS TRSASATTIS  360
PTPVSNPAPA SNPLPQTDPY SKRWTSQAAP ATESSHHSAK ELSWNSQIRP SVDPHPMMFT  420
NAGANSLQQD HSPGQPSQQP QSTSSSSLWS SRAVPPSPLP LPPSPWQNIS ILESQNFQMS  480
QEPQNYHHRA QYLQLDSRLH MNPHHISPAD EYSRFNLGSR DSGPGDELSL EQIIDQGSSP  540
LPLWSPREVP SPGSFPFLLQ FPDEQPPPPY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-23284344263ATERF1
3gcc_A4e-23284344263ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372944.10.0uncharacterized protein LOC112281037
TrEMBLA0A2K1KLY40.0A0A2K1KLY4_PHYPA; Uncharacterized protein
STRINGPP1S160_12V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-23ethylene response factor 110