PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_2530V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 571aa MW: 62200.8 Da PI: 6.6611 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 287 | 336 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa a++ a+ k++g Pp3c4_2530V3.1.p 287 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAMAYDIAATKFRG 336 7********.**********94....45***********************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.159 | 287 | 344 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.2E-13 | 287 | 336 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.72E-34 | 287 | 345 | No hit | No description |
SuperFamily | SSF54171 | 3.01E-22 | 287 | 345 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.6E-38 | 287 | 350 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-31 | 287 | 345 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 288 | 299 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 310 | 326 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 571 aa Download sequence Send to blast |
MVQSEIDTNC DLIATSFNLI KFPQLNATRS GLHHRVVAGW DMICVWNQPE RIDKLEPTDP 60 PDFKLTPPSS FRDLATGQMA GVSTMVSNFP LPLGTSAYSN ALSGFSNAAQ YTNYWGSNNP 120 LNPNPTDEGL GAAITGHKRL RSEKSDPFSS HYAATWNYPS ASLIADHSNI VGSSMSVDLA 180 SRASEEMSWA APLGEVVKKA TERSSPPRCT GSPSNTQDQY SSDSGILHSD YVASLPFSLP 240 HNEDPQMRKS SGLEQLEGGG SHPGERSGQG SEATPTPSPS PPVKKRRYRG VRQRPWGKWA 300 AEIRDPKKAA RVWLGTFDTA EDAAMAYDIA ATKFRGLRAK LNFPDGKIPS TRSASATTIS 360 PTPVSNPAPA SNPLPQTDPY SKRWTSQAAP ATESSHHSAK ELSWNSQIRP SVDPHPMMFT 420 NAGANSLQQD HSPGQPSQQP QSTSSSSLWS SRAVPPSPLP LPPSPWQNIS ILESQNFQMS 480 QEPQNYHHRA QYLQLDSRLH MNPHHISPAD EYSRFNLGSR DSGPGDELSL EQIIDQGSSP 540 LPLWSPREVP SPGSFPFLLQ FPDEQPPPPY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-23 | 284 | 344 | 2 | 63 | ATERF1 |
3gcc_A | 4e-23 | 284 | 344 | 2 | 63 | ATERF1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372944.1 | 0.0 | uncharacterized protein LOC112281037 | ||||
TrEMBL | A0A2K1KLY4 | 0.0 | A0A2K1KLY4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S160_12V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 2e-23 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_2530V3.1.p |