PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_25130V3.2.p | ||||||||
Common Name | PHYPADRAFT_126548 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 26713 Da PI: 4.6669 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.3e-20 | 36 | 86 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr + +g+Wv+eIr+p +kr r++lg+f tae+Aa+a++aa +l+g Pp3c4_25130V3.2.p 36 PKYKGVRMRQ-WGKWVSEIREP---NKRSRIWLGSFPTAEMAARAYDAALVCLRG 86 79*****998.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.17E-35 | 36 | 96 | No hit | No description |
Pfam | PF00847 | 1.3E-12 | 36 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-22 | 37 | 96 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.7E-39 | 37 | 100 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.156 | 37 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-32 | 37 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 38 | 49 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MVEKNVGPDG RVTAARYNLS VTKKEFKTKE AKPASPKYKG VRMRQWGKWV SEIREPNKRS 60 RIWLGSFPTA EMAARAYDAA LVCLRGPTAS LNFPDSPPQA LPVCNSPKDV QVAAAAAAAA 120 AEPCTPVSLP AQPAAQSLEA QLNEMETETK ESESHDLEES SASSTANSSP STPGSITTLE 180 DVDLAFLADM DFIDLPPLEP FDINQSHQSS FPESAALTQG DNPPYCRVSS GPILATDLEL 240 YKLLYGVK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-16 | 37 | 94 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024374612.1 | 0.0 | ethylene-responsive transcription factor ERF039-like | ||||
TrEMBL | A9SAK5 | 0.0 | A9SAK5_PHYPA; Predicted protein | ||||
STRING | PP1S60_269V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G21960.1 | 1e-31 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_25130V3.2.p |
Entrez Gene | 5926602 |
Publications ? help Back to Top | |||
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