PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_24710V3.2.p
Common NamePHYPADRAFT_163821
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 309aa    MW: 33782.2 Da    PI: 6.9014
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_24710V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.35.2e-10138181248
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 
                        +ykGVr++k    +++eIr  ++   +k+++lg++ t  eAa+a++a
  Pp3c4_24710V3.2.p 138 RYKGVRQRKGVSGYLVEIRPSKW---KKTIWLGTYNTDTEAAAAYDA 181
                        69******98777******9544...7**********99*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.99E-10138195IPR016177DNA-binding domain
PROSITE profilePS5103212.866138202IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-15138196IPR001471AP2/ERF domain
SMARTSM003801.7E-8138201IPR001471AP2/ERF domain
PfamPF008472.9E-6138181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MPDLGEYAHF RDVDTQLLQR SGPQGWAQCV CGSGIQSEHT GRCYNCYFPI THDVKPVEIP  60
ASFSGDLWNL VDFCQPPVLS RTIAMAEVDS VTSLYEQPFK VETVPNSDSP LGVTSSPYIK  120
PLPQRGRPPN GSKTGSQRYK GVRQRKGVSG YLVEIRPSKW KKTIWLGTYN TDTEAAAAYD  180
AGVFYTNKKT KFNFPELNGT FPSLPSKLRL DVPGHSEEIK MFVQREAKAA ARKVMSLLSK  240
SNQEPTAAVA APAVASSSST SSSSVESLVE LDAALAMPPL DFYLSLEDGL FWGQCPSSYI  300
ISDFNMSI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372365.10.0ethylene-responsive transcription factor 8-like
TrEMBLA0A2K1KPV10.0A0A2K1KPV1_PHYPA; Uncharacterized protein
STRINGPP1S60_228V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.13e-10related to AP2 1
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]