PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_24710V3.1.p | ||||||||
Common Name | PHYPADRAFT_163821 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 309aa MW: 33782.2 Da PI: 6.9014 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.3 | 5.2e-10 | 138 | 181 | 2 | 48 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 +ykGVr++k +++eIr ++ +k+++lg++ t eAa+a++a Pp3c4_24710V3.1.p 138 RYKGVRQRKGVSGYLVEIRPSKW---KKTIWLGTYNTDTEAAAAYDA 181 69******98777******9544...7**********99*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.99E-10 | 138 | 195 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 12.866 | 138 | 202 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-15 | 138 | 196 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-8 | 138 | 201 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.9E-6 | 138 | 181 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MPDLGEYAHF RDVDTQLLQR SGPQGWAQCV CGSGIQSEHT GRCYNCYFPI THDVKPVEIP 60 ASFSGDLWNL VDFCQPPVLS RTIAMAEVDS VTSLYEQPFK VETVPNSDSP LGVTSSPYIK 120 PLPQRGRPPN GSKTGSQRYK GVRQRKGVSG YLVEIRPSKW KKTIWLGTYN TDTEAAAAYD 180 AGVFYTNKKT KFNFPELNGT FPSLPSKLRL DVPGHSEEIK MFVQREAKAA ARKVMSLLSK 240 SNQEPTAAVA APAVASSSST SSSSVESLVE LDAALAMPPL DFYLSLEDGL FWGQCPSSYI 300 ISDFNMSI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372365.1 | 0.0 | ethylene-responsive transcription factor 8-like | ||||
TrEMBL | A0A2K1KPV1 | 0.0 | A0A2K1KPV1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S60_228V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46768.1 | 3e-10 | related to AP2 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_24710V3.1.p |
Entrez Gene | 5926507 |
Publications ? help Back to Top | |||
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