PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_23930V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 493aa    MW: 53658.1 Da    PI: 6.7159
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_23930V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.6e-18211260355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+++AeIrd s+ng  +r++lg++ tae Aa a+++a+ +++g
  Pp3c4_23930V3.2.p 211 YRGVRRRP-WGKFAAEIRDSSQNG--ARIWLGTYETAEAAAVAYDHAAFEMRG 260
                        9*******.**********87787..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-29210269IPR001471AP2/ERF domain
PROSITE profilePS5103223.433210268IPR001471AP2/ERF domain
SMARTSM003802.7E-34210274IPR001471AP2/ERF domain
CDDcd000181.87E-19210268No hitNo description
PRINTSPR003671.1E-9211222IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-21211270IPR016177DNA-binding domain
PfamPF008479.5E-12211260IPR001471AP2/ERF domain
PRINTSPR003671.1E-9234250IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MSVMVATPPC TPRTLQRWKL EEFQHYLLEE DDNLWITEEE LMPSQQMENS EELSAEAFLD  60
TLTSPSHTPK SPGLLPSWSS DELRSLDLSD QVRAQSMLDD LCNVMQAFSG QHSVQSRVHN  120
LFPAIPDNLS SSSVGPSYTR SCNGDSEHID FAESYLEDDD AQAWIESFGT EPQASSPSQE  180
EGCMPKKDDV PLRANLQTLQ VNSKRTRLFN YRGVRRRPWG KFAAEIRDSS QNGARIWLGT  240
YETAEAAAVA YDHAAFEMRG CKALLNFPLN AHIYSANLAA KKSAGSSPKS ANSSKSPSKT  300
SAPLRSSGRE QGKSSSAGTP AEKFSKPKSP STNSKFPKRA NPPALAEPAQ FTNLNQTSVQ  360
KVEAELAAQT LASSMAVVSP QLLQMKAAMM QKATGLITIC SLMQLLGGMS SPACSASYGT  420
LPQLPQRGFS YLEQAALINA LHQEQNYGFP STSAGLKRSR SAESFADPAS LWEPSSKKVF  480
RRTAAMGSST LY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-27210269261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.22310.0gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372983.10.0uncharacterized protein LOC112281055
TrEMBLA0A2K1KPR20.0A0A2K1KPR2_PHYPA; Uncharacterized protein
STRINGPP1S60_148V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61590.16e-23ERF family protein