PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_23130V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 513aa    MW: 56701.6 Da    PI: 6.8604
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_23130V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1017.9e-32214268155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k rlrWtpeLHe+Fv av++LGG+++AtPk++ +lm+v+g+t++hvkSHLQkYRl
  Pp3c4_23130V3.2.p 214 KSRLRWTPELHEKFVIAVAHLGGPDRATPKAVQRLMGVQGITIYHVKSHLQKYRL 268
                        68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.082211271IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-29212269IPR009057Homeodomain-like
SuperFamilySSF466897.7E-17213268IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-24214269IPR006447Myb domain, plants
PfamPF002491.4E-8216267IPR001005SANT/Myb domain
PfamPF143792.3E-19300345IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MITALHQMLF LCLSIVWSSS NATRFVDFPS SLAQRHHHHH AEETLREIEC EHRASDPGSF  60
FGKIRNFFWT FLRASNNRCC PLSTPMWNSD LLQPPEEEAA LPQEERPLAA VPMAEPETDL  120
FGAGREWLIW NQLVPEEDVV ASCWTQLIDV EQDDGKTLNH TIKYMPLQTP LQVEPVASRP  180
PTTEQRPKSS SGATSAESPK PSSSEAGTSG SASKSRLRWT PELHEKFVIA VAHLGGPDRA  240
TPKAVQRLMG VQGITIYHVK SHLQKYRLAK YMPEISEEAK AERRKHDSLL TSLDLGSSYQ  300
IAQALQLQME VQKKLHEQLE IQRELQLRIE AQGQSLQKML EQQAKLNHPD LPIGMPSSST  360
NTVVPTPSSL ALSDSSNTTT RSEDQHAENS AVSTTLAHSQ TTMDKIDQKQ TEAGLTSNTL  420
LTEPAAKRAC HETSSQVNLS GQANNIVVPR TKPSYAWESP SPQVQRSSRT MQESQQLQTS  480
TAAGSPQKVP QQAHAASISQ HPGRVAQKPV QA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-21214271259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-21214271259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-21214271259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-21214271259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-21214271259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-21214271259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-21214271259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-21214271259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.26950.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372493.10.0uncharacterized protein LOC112280843 isoform X1
TrEMBLA9SA920.0A9SA92_PHYPA; Predicted protein
STRINGPP1S60_59V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.13e-53G2-like family protein