PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c4_22880V3.1.p

Common Name

PHYPADRAFT_163767

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 280aa MW: 31160.4 Da PI: 8.1969

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c4_22880V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.8	8.9e-16	43	118	1	71
trihelix 1 rWtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 rWtk+e l+L++a+++ +++ ++ + +W + ++++e g+er + qC+++w +l k+ykkik+ ek + Pp3c4_22880V3.1.p 43 RWTKHESLVLVAAKSKELDKSLDSTargvdASDVKWVTIFQYCKELGVERDASQCRKRWHSLYKDYKKIKDYEKLH 118 8***********9544444433223333999**************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.8E-11	43	125	No hit	No description
PROSITE profile	PS50090	6.249	43	105	IPR017877	Myb-like domain

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MQEVAGGVAT TEGESRALGY APTKSVSISP RMEGPDKGQR GLRWTKHESL VLVAAKSKEL 60 DKSLDSTARG VDASDVKWVT IFQYCKELGV ERDASQCRKR WHSLYKDYKK IKDYEKLHGG 120 SYWAMTAEQR REQKLASSFE HEVFEVLDNY CKKLPAISAK VTSEAAVAGK EEMDVLVDEV 180 EGLGNPASSE ECGLGNSTDV TGCPKVEESL TKRKKRKRRP ESIEEKLLAA LESTSRNLQL 240 QLRHDRELRI EEGKGLMTLL DKLLTSVGRI ADALEVRKS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	212	217	RKKRKR
2	212	218	RKKRKRR
3	213	218	KKRKRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.1991	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024373724.1	0.0	trihelix transcription factor ASR3-like
Refseq	XP_024374422.1	0.0	trihelix transcription factor ASR3-like
TrEMBL	A0A2K1KPL3	0.0	A0A2K1KPL3_PHYPA; Uncharacterized protein
STRING	PP1S60_28V6.1	0.0	(Physcomitrella patens)
STRING	PP1S60_31V6.2	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP13565	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-17	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pp3c4_22880V3.1.p
Entrez Gene	5926455

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]